| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,190,043 | (GA)4→5 | coding (405/672 nt) | phoP ← | response regulator in two‑component regulatory system with PhoQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,190,035 | 1 | . | G | 100.0% | 108.5 / NA | 32 | R138P (CGC→CCC) | phoP | response regulator in two‑component regulatory system with PhoQ |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (18/14); total (18/14) | |||||||||||
| * | NC_000913 | 1,190,035 | 2 | . | A | 100.0% | 100.8 / NA | 32 | R138L (CGC→CTC) | phoP | response regulator in two‑component regulatory system with PhoQ |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (18/14); total (18/14) | |||||||||||
AGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGC‑‑GAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAG > NC_000913/1189897‑1190164 || aGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGc < 1:724940/139‑1 (MQ=255) cTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGC‑‑ga > 2:622937/1‑139 (MQ=255) ggATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGC‑‑gagagagagatc < 1:662252/139‑5 (MQ=255) gAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACg > 2:279370/1‑139 (MQ=255) ttAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACgggggg > 2:161078/1‑139 (MQ=255) aaTCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGaa < 2:625065/139‑1 (MQ=255) tttGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGa < 2:189292/139‑1 (MQ=255) gCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCt > 1:168400/1‑139 (MQ=255) cACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAg < 2:263738/139‑1 (MQ=255) aCTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGc < 1:417626/139‑1 (MQ=255) tttGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCa > 1:519644/1‑139 (MQ=255) cGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcg < 1:325228/139‑1 (MQ=255) taGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAg > 1:65805/1‑108 (MQ=255) taGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAg < 2:65805/108‑1 (MQ=255) taGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCAtt > 2:439753/1‑139 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGc > 1:466088/1‑102 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGc < 2:466088/102‑1 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgc > 1:229137/1‑139 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCgcgc > 2:768192/1‑139 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCgcgc > 2:401044/1‑139 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCgcgc > 1:214444/1‑139 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCgcgc > 1:250101/1‑139 (MQ=255) aTTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc < 1:599557/139‑1 (MQ=255) tCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt > 1:303637/1‑139 (MQ=255) tCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGAGCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt < 2:10198/139‑1 (MQ=255) aaCGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc < 1:401044/139‑1 (MQ=255) aaCGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc < 2:229137/139‑1 (MQ=255) aaCGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc < 1:161078/139‑1 (MQ=255) aCGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGC‑‑gagag < 2:266899/50‑1 (MQ=255) aCGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGC‑‑gagag > 1:266899/1‑50 (MQ=255) cgcgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcgcc < 2:259099/109‑1 (MQ=255) cgcgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcgcc > 1:259099/1‑109 (MQ=255) cgcgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACct > 1:11235/1‑139 (MQ=255) tCGTCATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGttt > 1:648740/1‑139 (MQ=255) cATTAATAGATAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTc < 1:759562/139‑1 (MQ=255) aTAATTCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAatca > 1:233544/1‑139 (MQ=255) ttCACGGCGAGAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGAACTGTGAAGCCAGACCGCTATTACGCCGCATTAATGTCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCAAATATTCATTAg > 2:573994/1‑139 (MQ=255) || AGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGC‑‑GAGAGAGATCAACCTGAAACGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAG > NC_000913/1189897‑1190164 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |