| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,600,609 | (C)5→6 | coding (132/471 nt) | bcp → | peroxiredoxin, thiol peroxidase, thioredoxin‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,600,604 | 1 | . | C | 97.9% | 169.0 / ‑3.4 | 48 | coding (127/471 nt) | bcp | peroxiredoxin, thiol peroxidase, thioredoxin‑dependent |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (23/24); total (23/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01 | |||||||||||
AGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑CCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAAGA > NC_000913/2600474‑2600731 | aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑ccc‑cccgg < 1:982245/139‑4 (MQ=255)aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑ccc‑cccgg < 1:380457/139‑4 (MQ=255) tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTa < 1:717427/139‑1 (MQ=255) tCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGt > 1:73272/1‑139 (MQ=255) tCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGt > 1:139517/1‑139 (MQ=255) aCTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACa > 1:1687289/1‑139 (MQ=255) gCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTa > 1:639745/1‑125 (MQ=255) gCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTa < 2:639745/125‑1 (MQ=255) gCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGc > 1:1505877/1‑139 (MQ=255) atatCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTa > 1:871410/1‑118 (MQ=255) atatCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTa < 2:871410/118‑1 (MQ=255) cACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATa > 1:1377355/1‑139 (MQ=255) aaaTTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATg > 2:1364390/1‑139 (MQ=255) tttAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGAt < 1:446519/139‑1 (MQ=255) tAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGa < 2:139517/139‑1 (MQ=255) tAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGa < 2:73272/139‑1 (MQ=255) aGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTAcgcg < 2:1348402/125‑1 (MQ=255) aGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTAcgcg > 1:1348402/1‑125 (MQ=255) tCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGc < 2:1687289/139‑1 (MQ=255) tCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGc > 2:115142/1‑139 (MQ=255) aGACGGAGAACAAGTTAATTTGACCGACTCCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑CCCACCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCggg < 2:1119084/139‑1 (MQ=255) aCGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCg < 2:1377355/139‑1 (MQ=255) aaCAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtg > 1:1541933/1‑139 (MQ=255) aaGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGc < 2:1541933/139‑1 (MQ=255) gTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtgtg > 1:759058/1‑136 (MQ=255) gTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtgtg < 2:759058/136‑1 (MQ=255) tttGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTAt < 2:1505877/139‑1 (MQ=255) tttGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTAt < 2:838650/139‑1 (MQ=255) tttGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTAt < 1:115142/139‑1 (MQ=255) aGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAAc < 2:1342677/139‑1 (MQ=255) cAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACa > 2:1685665/1‑57 (MQ=255) cAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACa < 1:1685665/57‑1 (MQ=255) aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATgg > 1:808217/1‑82 (MQ=255) aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATgg < 2:808217/82‑1 (MQ=255) aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATg < 2:1601476/85‑1 (MQ=255) aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATg > 1:1601476/1‑85 (MQ=255) aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTg < 2:1022364/106‑1 (MQ=255) aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTg > 1:1022364/1‑106 (MQ=255) aGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGaaa > 2:1542770/1‑139 (MQ=255) cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtgtg < 1:72997/109‑1 (MQ=255) cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtgtg > 2:72997/1‑109 (MQ=255) cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑ccc‑cc < 2:1358402/39‑1 (MQ=255) cGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑ccc‑cc > 1:1358402/1‑39 (MQ=255) ttCTGGTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAActct > 1:1247280/1‑139 (MQ=255) gTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTg > 2:1419204/1‑95 (MQ=255) gTTTATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTg < 1:1419204/95‑1 (MQ=255) tttATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGAt > 2:1665485/1‑72 (MQ=255) tttATTTCTACCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGAt < 1:1665485/72‑1 (MQ=255) aCCCGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGaaa > 1:880958/1‑139 (MQ=255) cccGAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGaaaa > 2:896403/1‑139 (MQ=255) cGAAAGCCATTACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAag < 1:1542770/139‑1 (MQ=255) gAAAGCCATGACCCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAaga < 2:880958/139‑1 (MQ=255) | AGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATGA‑CCC‑CCGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAAGA > NC_000913/2600474‑2600731 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |