Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,761,969	0	T	C	51.5%	20.7 / 123.6	97	intergenic (‑14/‑214)	yibF/rhsA	glutathione S‑transferase homolog/Rhs protein with putative toxin 55 domain, putative polysaccharide synthesis/export protein, putative neighboring cell growth inhibitor
Reads supporting (aligned to +/- strand):  ref base T (21/26);  new base C (22/28);  total (43/54)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.08e-01
Rejected as consensus: Frequency below/above cutoff threshold.

GCCACGCCGTTGTCCGCGTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGA  >  NC_000913/3761834‑3762101                                                                                                                                        |                                                                                                                                     gcCACGCCGTTGTCCGTGTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGcgcg                                                                                                                                   <  1:1296849/139‑1 (MQ=255)    aCGCCGTTGTCCGTGTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAgg                                                                                                                                <  1:1005188/139‑1 (MQ=255)     cGCCGTTGTCCGTGTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGa                                                                                                                               >  1:229728/1‑139 (MQ=255)      gCCGTTGTCCGTGTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGaa                                                                                                                              <  2:229728/139‑1 (MQ=255)              ccGTGTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCa                                                                                                                      <  1:50669/139‑1 (MQ=255)                 tgTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTa                                                                                                                   <  1:1206957/138‑1 (MQ=255)                 tgTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGt                                                                                                                    <  2:1474780/137‑1 (MQ=255)                 tgTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGt                                                                                                                    >  1:1474780/2‑138 (MQ=255)                 tgTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTa                                                                                                                   <  1:1399859/138‑1 (MQ=255)                 tgTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTa                                                                                                                   <  1:30899/138‑1 (MQ=255)                 tgTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTa                                                                                                                   <  1:539806/138‑1 (MQ=255)                   ttATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATg                                                                                                                 <  2:446843/139‑1 (MQ=255)                           cAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTg                                                                                                         >  2:224618/1‑139 (MQ=255)                           cAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTg                                                                                                         >  1:1382658/1‑139 (MQ=255)                             gTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAatat                                                                                                                        <  1:1014639/122‑1 (MQ=255)                             gTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGAt                                                                                                       >  1:1139606/1‑139 (MQ=255)                             gTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGAGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAatat                                                                                                                        >  2:1014639/1‑122 (MQ=255)                              ttCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATg                                                                                                      >  2:1613617/1‑139 (MQ=255)                              ttCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATg                                                                                                      >  2:1027555/1‑139 (MQ=255)                                   taataaATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGaaa                                                                                                 <  1:224618/139‑1 (MQ=255)                                         aTTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGc                                                                                           <  2:1219/139‑1 (MQ=255)                                          ttCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGaaaaa                                                                                                                           <  1:1471595/106‑1 (MQ=255)                                          ttCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGaaaaa                                                                                                                           >  2:1471595/1‑106 (MQ=255)                                          ttCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCa                                                                                          >  2:969153/1‑139 (MQ=255)                                             gAAAGTTATGCCCTTTTCTAACAACAGAATAGAACGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTa                                                                                                                   <  2:1243819/111‑1 (MQ=255)                                             gAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTa                                                                                                                   >  1:1243819/1‑111 (MQ=255)                                              aaaGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGaaa                                                                                      <  1:1613617/139‑1 (MQ=255)                                                            ttCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGa                                                                               >  2:1729378/1‑132 (MQ=255)                                                            ttCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGa                                                                               <  1:1729378/132‑1 (MQ=255)                                                                      aGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGa                                                                               <  1:702616/122‑1 (MQ=255)                                                                      aGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGa                                                                               >  2:702616/1‑122 (MQ=255)                                                                      aGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCaa                                                              >  2:337563/1‑139 (MQ=255)                                                                        aatggAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCaaat                                                            >  2:1358829/5‑139 (MQ=255)                                                                        aaTGGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCaaat                                                            <  1:1358829/139‑1 (MQ=255)                                                                        aaTAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGt                                                                                                                    >  1:287939/1‑83 (MQ=255)                                                                        aaTAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGt                                                                                                                    <  2:287939/83‑1 (MQ=255)                                                                        aaTAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAatat                                                                                                                        >  1:1243787/1‑79 (MQ=255)                                                                        aaTAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAatat                                                                                                                        <  2:1243787/79‑1 (MQ=255)                                                                            gAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCaaataaat                                                        <  1:969153/139‑1 (MQ=255)                                                                             aaaGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTa                                                                                                                   >  2:467471/1‑79 (MQ=255)                                                                             aaaGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTa                                                                                                                   <  1:467471/79‑1 (MQ=255)                                                                             aaaGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGtt                                                                                 >  2:1038673/1‑113 (MQ=255)                                                                             aaaGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGtt                                                                                 <  1:1038673/113‑1 (MQ=255)                                                                              aaGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATca                                                      <  2:214969/139‑1 (MQ=255)                                                                               aGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATcac                                                     <  1:337563/139‑1 (MQ=255)                                                                                 tttGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACat                                                   <  1:1662605/139‑1 (MQ=255)                                                                                  ttGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTa                                                                                                                   <  2:729770/74‑1 (MQ=255)                                                                                  ttGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTa                                                                                                                   >  1:729770/1‑74 (MQ=255)                                                                                  ttGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGtt                                                                                 <  2:1686273/108‑1 (MQ=255)                                                                                  ttGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGtt                                                                                 >  1:1686273/1‑108 (MQ=255)                                                                                  ttGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGt                                                                                                                    >  1:556245/1‑73 (MQ=255)                                                                                  ttGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGt                                                                                                                    <  2:556245/73‑1 (MQ=255)                                                                                  ttGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCaaataa                                                          >  2:1701458/1‑131 (MQ=255)                                                                                  ttGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCaaataa                                                          <  1:1701458/131‑1 (MQ=255)                                                                                  ttGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACata                                                  >  2:26314/1‑139 (MQ=255)                                                                                   tGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACat                                                   <  1:1007245/137‑1 (MQ=255)                                                                                   tGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACat                                                   >  2:1007245/1‑137 (MQ=255)                                                                                    gCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGt                                                                                                                    <  1:1121633/71‑1 (MQ=255)                                                                                    gCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGt                                                                                                                    >  2:1121633/1‑71 (MQ=255)                                                                                    gCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTa                                                                                                                   <  1:696233/72‑1 (MQ=255)                                                                                    gCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTa                                                                                                                   >  2:696233/1‑72 (MQ=255)                                                                                    gCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCaaataaat                                                        <  1:918025/131‑1 (MQ=255)                                                                                    gCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCaaataaat                                                        >  2:918025/1‑131 (MQ=255)                                                                                           aaCGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATg                                         <  1:1027555/139‑1 (MQ=255)                                                                                           aaCGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATg                                         <  2:465493/139‑1 (MQ=255)                                                                                                    gtgtAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATc                                                       >  2:10928/1‑116 (MQ=255)                                                                                                    gtgtAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATc                                                       <  1:10928/116‑1 (MQ=255)                                                                                                       tAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCa                                           <  1:1241934/125‑1 (MQ=255)                                                                                                       tAGCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGAAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCa                                           >  2:1241934/1‑125 (MQ=255)                                                                                                         gCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGaa                                                                                       <  1:1003635/79‑1 (MQ=255)                                                                                                         gCTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATCGCCTGGTGATGGGAAAAAGGGCAGaa                                                                                       >  2:1003635/1‑79 (MQ=255)                                                                                                          cTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGcc                                                                                                              <  1:311354/55‑1 (MQ=255)                                                                                                          cTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGcc                                                                                                              >  2:311354/1‑55 (MQ=255)                                                                                                          cTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGcc                                                                                                              <  1:1322788/55‑1 (MQ=255)                                                                                                          cTACCGACGAGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGcc                                                                                                              >  2:1322788/1‑55 (MQ=255)                                                                                                              cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGaaa                                                                                                                             <  1:1164608/36‑1 (MQ=255)                                                                                                              cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGaaa                                                                                                                             >  2:1164608/1‑36 (MQ=255)                                                                                                              cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAGAAGGGCa                                                                                          >  2:1127524/1‑71 (MQ=255)                                                                                                              cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCa                                                                                          <  1:1127524/71‑1 (MQ=255)                                                                                                              cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCt                      >  2:336498/1‑139 (MQ=255)                                                                                                              cgacgaGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGtt                                                                                 >  1:1186292/1‑80 (MQ=255)                                                                                                              cgacgaGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGtt                                                                                 <  2:1186292/80‑1 (MQ=255)                                                                                                              cgacgaGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATgg                                        >  2:404728/1‑121 (MQ=255)                                                                                                              cgacgaGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATgg                                        <  1:404728/121‑1 (MQ=255)                                                                                                              cgacgaGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCt                      >  2:1516312/1‑139 (MQ=255)                                                                                                               gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATg                                         >  2:247581/1‑119 (MQ=255)                                                                                                               gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATg                                         >  2:254372/1‑119 (MQ=255)                                                                                                               gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATg                                         <  1:247581/119‑1 (MQ=255)                                                                                                               gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATg                                         <  1:254372/119‑1 (MQ=255)                                                                                                               gacgaGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGa                                                                               <  1:582460/81‑1 (MQ=255)                                                                                                               gacgaGTTTCATGCCGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGa                                                                               >  2:582460/1‑81 (MQ=255)                                                                                                                             cGAGTCCTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTg       <  1:1516312/139‑1 (MQ=255)                                                                                                                               aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGAt     <  2:1139606/139‑1 (MQ=255)                                                                                                                                  ccTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGa  <  1:336498/139‑1 (MQ=255)                                                                                                                                  ccTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGa  <  2:1382658/139‑1 (MQ=255)                                                                                                                                  ccTTTGCGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGa  <  1:26314/139‑1 (MQ=255)                                                                                                                                     ttGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGa                                                                               <  2:517403/59‑1 (MQ=255)                                                                                                                                     ttGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGa                                                                               >  1:517403/1‑59 (MQ=255)                                                                                                                                      tgtgCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACat                                                   <  2:67289/86‑1 (MQ=255)                                                                                                                                      tgtgCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACat                                                   >  1:67289/1‑86 (MQ=255)                                                                                                                                        |                                                                                                                                     GCCACGCCGTTGTCCGCGTTATAGGGCAGTTCATTAATAAATTCGAAAGTTATGCCCTTTTCTAACAACAGAATAGAAAGTTTGCGTACAAACGGGCTGGTGTAGCTACCGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGA  >  NC_000913/3761834‑3762101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑