Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,381,789 G→A pseudogene (13/126 nt) ycjV → pseudogene, putative ATP‑binding component of a transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,381,7890GA100.0% 165.3 / NA 51pseudogene (13/126 nt)ycjVpseudogene, putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (26/25);  total (26/25)

ATCGTGATGGGAATACGACCGGAAGATATTCATCCGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAGTGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATACAGGGGGAAGGCATTCCCC  >  NC_000913/1381655‑1381924
                                                                                                                                      |                                                                                                                                       
aTCGTGATGGGAATACGACCGGAAGATATTCATCCGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGTGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGt                                                                                                                                     <  2:1228327/139‑1 (MQ=255)
aTCGTGATGGGAATACGACCGGAAGATATTCATCCGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGt                                                                                                                                     <  2:1261828/139‑1 (MQ=255)
  cGTGATGGGAATACGACCGGAAGATATTCATCCGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTcc                                                                                                                                   >  2:1549761/1‑139 (MQ=255)
      aTGGGAATACGACCGGAAGATATTCATCCGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATg                                                                                                                                       >  2:386433/1‑131 (MQ=255)
         ggAATACGACCGGAAGATATTCATCCGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTgg                                                                                                                            <  1:1549761/139‑1 (MQ=255)
         ggAATACGACCGGAAGATATTCATCCGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTgg                                                                                                                            <  2:1540548/139‑1 (MQ=255)
               cGACCGGAAGATATTCATCCGGACGCGCAAGAGGAAAATAACATTTCTGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGtt                                                                                                                      >  2:1666526/1‑139 (MQ=255)
                     gAAGATATTCATCCGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGa                                                                                                                >  2:784488/1‑139 (MQ=255)
                        gATATTCATCCGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTa                                                                                                             <  1:784488/139‑1 (MQ=255)
                           atTCATCCGGACGCGCAAGAGGAAAATAACATTTCTGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCa                                                                                                          <  1:1666526/139‑1 (MQ=255)
                             tCATCCGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATg                                                                                                        <  1:226539/139‑1 (MQ=255)
                                  cGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGga                                                                                                   <  2:435135/139‑1 (MQ=255)
                                  cGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGga                                                                                                   <  1:271950/139‑1 (MQ=255)
                                       gcgcAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGaaaa                                                                                              >  1:228530/1‑139 (MQ=255)
                                                       aCATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAatat                                                                                           <  2:694225/126‑1 (MQ=255)
                                                       aCATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAatat                                                                                           >  1:694225/1‑126 (MQ=255)
                                                         aTTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGGACGAGATAATGGTGCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATAACTATTCATTTTGa                                                                            >  2:1181922/1‑139 (MQ=255)
                                                             ccGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATg                                                                        >  2:910541/1‑139 (MQ=255)
                                                                              gCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTaa                                                                                                                    <  1:479905/78‑1 (MQ=255)
                                                                              gCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTaa                                                                                                                    >  2:479905/1‑78 (MQ=255)
                                                                              gCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTa                                                                                                                     <  1:749808/77‑1 (MQ=255)
                                                                              gCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTa                                                                                                                     >  2:749808/1‑77 (MQ=255)
                                                                              gCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCtt                                                       >  2:1561416/1‑139 (MQ=255)
                                                                                       aCCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGa                                              >  2:1595445/1‑139 (MQ=255)
                                                                                        ccGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGaa                                             >  2:849005/1‑139 (MQ=255)
                                                                                            tGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAatat                                                                                           >  1:15875/1‑89 (MQ=255)
                                                                                            tGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAatat                                                                                           <  2:15875/89‑1 (MQ=255)
                                                                                              cGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATg                                                                                                        >  1:327341/1‑74 (MQ=255)
                                                                                              cGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATg                                                                                                        <  2:327341/74‑1 (MQ=255)
                                                                                                 aaTTTATGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATa                                    >  1:606418/1‑139 (MQ=255)
                                                                                                      aTGCTCTACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAAt                               >  2:215922/1‑139 (MQ=255)
                                                                                                           ctACACCACGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCt                          <  1:910541/139‑1 (MQ=255)
                                                                                                              caccacGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAatat                                                                                           >  1:1111473/1‑71 (MQ=255)
                                                                                                              caccacGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAatat                                                                                           <  2:1111473/71‑1 (MQ=255)
                                                                                                              caccacGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTaaa                       >  2:861579/1‑139 (MQ=255)
                                                                                                                 cacGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTa                                                                                                             <  2:16949/50‑1 (MQ=255)
                                                                                                                 cacGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTa                                                                                                             >  1:16949/1‑50 (MQ=255)
                                                                                                                 cacGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATAc                    <  2:228530/139‑1 (MQ=255)
                                                                                                                   cGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCa                                                                                                          <  2:1264516/51‑1 (MQ=255)
                                                                                                                   cGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCa                                                                                                          >  1:1264516/1‑51 (MQ=255)
                                                                                                                   cGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGa                                                                    <  1:380868/89‑1 (MQ=255)
                                                                                                                   cGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGa                                                                    >  2:380868/1‑89 (MQ=255)
                                                                                                                   cGGTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATACAg                  >  2:42789/1‑139 (MQ=255)
                                                                                                                    ggTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAAt                                                                                                                  <  2:80061/42‑1 (MQ=255)
                                                                                                                    ggTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAAt                                                                                                                  >  1:80061/1‑42 (MQ=255)
                                                                                                                    ggTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAAt                                                                 <  2:1189233/91‑1 (MQ=255)
                                                                                                                    ggTTGGGGGCACGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAAt                                                                 >  1:1189233/1‑91 (MQ=255)
                                                                                                                              aCGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATACAGGGGGAAGGCAt       <  2:606418/139‑1 (MQ=255)
                                                                                                                              aCGAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATACAGGGGGAAGGCAt       <  1:215922/139‑1 (MQ=255)
                                                                                                                                gAGTTAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATACAGGGGGAAGGCATTc     >  1:1617380/1‑139 (MQ=255)
                                                                                                                                   ttAATGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATACAGGGGGAAGGCATTcccc  <  1:1561416/139‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                       
ATCGTGATGGGAATACGACCGGAAGATATTCATCCGGACGCGCAAGAGGAAAATAACATTTCCGCCAAAATTAGCGTGGCAGAATTAACCGGTGCGGAATTTATGCTCTACACCACGGTTGGGGGCACGAGTTAGTGGTCCGTGCTGGTGCGTTAAATGATTATCATGCAGGAGAAAATATCACTATTCATTTTGATATGACGAAATGTCATTTCTTTGATGCAGAAACGGAAATAGCAATTCGCTAAATACAGGGGGAAGGCATTCCCC  >  NC_000913/1381655‑1381924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑