| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,400,348 | G→A | P476S (CCC→TCC) | abgT ← | p‑aminobenzoyl‑glutamate transporter, membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,400,348 | 0 | G | A | 90.0% | 151.4 / 9.1 | 61 | P476S (CCC→TCC) | abgT | p‑aminobenzoyl‑glutamate transporter, membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (3/3); new base A (26/28); total (30/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.42e-01 | |||||||||||
TCAAGTAATCTCAGCATCCGTTCTCTCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAA > NC_000913/1400220‑1400473 | tcAAGTAATCTCAGCATCCGTTCTCTCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAAc < 1:1334538/139‑1 (MQ=255) ctcAGCATCCGTTCTCTCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATagtaa < 2:1625850/139‑1 (MQ=255) tCCGTTCTCTCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCa > 2:1538777/1‑139 (MQ=255) aaCGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAggg > 2:708137/1‑94 (MQ=255) aaCGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAggg < 1:708137/94‑1 (MQ=255) aaCGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTa > 1:1040775/1‑102 (MQ=255) aaCGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTc < 2:567080/130‑1 (MQ=255) aaCGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTc > 1:567080/1‑130 (MQ=255) aaCGGGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGAcca < 2:1040775/102‑3 (MQ=255) aCGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGTCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAg < 2:1382492/139‑1 (MQ=255) aCGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAg < 2:947074/139‑1 (MQ=255) ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTAccc > 1:22290/1‑113 (MQ=255) ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTAccc < 2:22290/113‑1 (MQ=255) ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTg > 2:60542/1‑139 (MQ=255) aaaTACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAg < 1:24709/139‑1 (MQ=255) aaaTACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAg < 1:60542/139‑1 (MQ=255) aCCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAAt > 1:1650833/1‑139 (MQ=255) cGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTAc > 1:510109/1‑101 (MQ=255) cGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTAc < 2:510109/101‑1 (MQ=255) ggACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGttt < 2:924723/107‑1 (MQ=255) ggACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGttt > 1:924723/1‑107 (MQ=255) ggACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCaa > 1:807787/1‑139 (MQ=255) aTCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACaa < 1:383988/74‑1 (MQ=255) aTCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACaa > 2:383988/1‑74 (MQ=255) aTCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGa < 2:88963/135‑1 (MQ=255) aTCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGa > 1:88963/1‑135 (MQ=255) aTCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACa > 1:1094253/1‑139 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAg > 2:514150/1‑139 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGaaa < 2:596685/136‑1 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGaaa > 1:596685/1‑136 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAg < 2:196358/139‑1 (MQ=255) gACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAAc < 1:1412658/74‑1 (MQ=255) gACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAAc > 2:1412658/1‑74 (MQ=255) cAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAgg > 2:418167/1‑139 (MQ=255) cGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGaaa < 1:1633637/114‑1 (MQ=255) cGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGaaa > 2:1633637/1‑114 (MQ=255) cGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGgc > 2:946759/1‑139 (MQ=255) cGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACG‑ATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAg < 2:1662480/116‑1 (MQ=255) cGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACG‑ATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAg > 1:1662480/1‑116 (MQ=255) gCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACaa > 2:666126/1‑50 (MQ=255) gCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACaa < 1:666126/50‑1 (MQ=255) gCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACaa < 1:461947/124‑1 (MQ=255) gCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACaa > 2:461947/1‑124 (MQ=255) cAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCt > 1:617226/1‑139 (MQ=255) cAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCt < 2:1094253/139‑1 (MQ=255) aGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTa > 1:366458/1‑139 (MQ=255) aGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTa < 1:514150/139‑1 (MQ=255) aCATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAgg < 1:946759/139‑1 (MQ=255) tCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCaa < 1:1538777/139‑1 (MQ=255) gcagcCATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATAc < 2:1650833/139‑1 (MQ=255) cATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGt < 1:1385767/64‑1 (MQ=255) cATACCACCAAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGt > 2:1385767/1‑64 (MQ=255) accaAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCgg < 2:617226/139‑1 (MQ=255) ccaAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGt > 1:602802/1‑57 (MQ=255) ccaAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGt < 2:602802/57‑1 (MQ=255) caAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAg < 2:1188358/75‑1 (MQ=255) caAAAAGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAg > 1:1188358/1‑75 (MQ=255) aaaaaGATAAGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCaa > 1:457264/1‑139 (MQ=255) aTAAGTGGATAGGCCAAGACTGACGAATAGTACGTACCCAGTTTCGAGTCTGGTTTGTAGCGTTGAAGGCATCCTAGAAACAAAGGAACAAAAGGATATACCGGCGCTATAGGCAATACGGATCAGTCGCCAATACGaa > 2:365232/1‑139 (MQ=255) aGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGt < 2:1587313/46‑1 (MQ=255) aGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGt > 1:1587313/1‑46 (MQ=255) aGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCACGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGAt > 2:247622/1‑120 (MQ=255) aGTGGATAGGACAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGAt < 1:247622/120‑1 (MQ=255) | TCAAGTAATCTCAGCATCCGTTCTCTCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCCAGTTTCGCGTCTGGTTTGTAGCGTTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAA > NC_000913/1400220‑1400473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |