Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,881,463 G→A A116V (GCG→GTG)  dmlR ← transcriptional activator of dmlA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,881,4630GA100.0% 199.5 / NA 62A116V (GCG→GTG) dmlRtranscriptional activator of dmlA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (29/33);  total (29/33)

TTGCGGGCGATTAAATTAGGGGCGATGTCATCGCCAATGCGAATATCGAGATCGACACCTTCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCGCTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGC  >  NC_000913/1881331‑1881596
                                                                                                                                    |                                                                                                                                     
ttGCGGGCGATTAAATTAGGGGCGATGTCATCGCCAATGCGAATATCGAGATCGACACCTTCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACtaata                                                                                                                                 <  2:769038/139‑1 (MQ=255)
                        aTGTCATCGCCAATGCGAATATCGAGATCGACACCTTCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTgtcgtc                                                                                                         >  1:923599/1‑139 (MQ=255)
                         tGTCATCGCCAATGCGAATATCGAGATCGACACCTTCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTcc                                                                                                        <  1:69141/139‑1 (MQ=255)
                                    aTGCGAATATCGAGATCGACACCTTCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAgc                                                                                             >  1:634863/1‑139 (MQ=255)
                                    aTGCGAATATCGAGATCGACACCTTCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAgc                                                                                             <  2:634863/139‑1 (MQ=255)
                                     tGCGAATATCGAGATCGACACCTTCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAgct                                                                                            <  2:1720879/139‑1 (MQ=255)
                                                  aTCGACACCTTCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACgc                                                                               >  2:902563/1‑139 (MQ=255)
                                                     gACACCTTCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACgcagc                                                                            <  2:968420/139‑1 (MQ=255)
                                                      acacCTTCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACgcagca                                                                           <  1:902563/139‑1 (MQ=255)
                                                          cTTCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATccc                                                                       >  2:1558014/1‑139 (MQ=255)
                                                            tCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCt                                                                     >  2:1593386/1‑139 (MQ=255)
                                                             cATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAgct                                                                                            <  1:151849/115‑1 (MQ=255)
                                                             cATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAgct                                                                                            >  2:151849/1‑115 (MQ=255)
                                                                    cAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAg                                                                                                                        >  2:687381/1‑80 (MQ=255)
                                                                    cAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAg                                                                                                                        <  1:687381/80‑1 (MQ=255)
                                                                    cAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACg                                                                                <  2:1310429/120‑1 (MQ=255)
                                                                    cAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACg                                                                                >  1:1310429/1‑120 (MQ=255)
                                                                      aaTCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCt                                                                     >  1:698136/1‑129 (MQ=255)
                                                                      aaTCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCt                                                                     <  2:698136/129‑1 (MQ=255)
                                                                       aTCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATc                                                                         >  2:1599034/1‑124 (MQ=255)
                                                                       aTCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATc                                                                         <  1:1599034/124‑1 (MQ=255)
                                                                        tCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTg                                                                                                              <  1:1134947/86‑1 (MQ=255)
                                                                        tCGACCACTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACGAATAACGCCGGAGCCACCACCTg                                                                                                              >  2:1134947/1‑86 (MQ=255)
                                                                          gACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGc                                                       <  2:1389623/139‑1 (MQ=255)
                                                                            ccAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACg                                                        <  1:1602232/136‑1 (MQ=255)
                                                                            ccAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACg                                                        >  2:1602232/1‑136 (MQ=255)
                                                                                tCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCa                                                                                                 >  1:841934/1‑91 (MQ=255)
                                                                                tCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCa                                                                                                 <  2:841934/91‑1 (MQ=255)
                                                                                       tCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGa                                                                                                                         <  2:271196/60‑1 (MQ=255)
                                                                                       tCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGa                                                                                                                         >  1:271196/1‑60 (MQ=255)
                                                                                            aTCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTcc                                     <  1:1558014/139‑1 (MQ=255)
                                                                                             tCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCca                                    <  1:179815/139‑1 (MQ=255)
                                                                                              cAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCg                                                                                                                           <  1:409221/51‑1 (MQ=255)
                                                                                              cAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCg                                                                                                                           >  2:409221/1‑51 (MQ=255)
                                                                                                aaaCGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAgctgc                                                                                          >  2:927520/1‑82 (MQ=255)
                                                                                                aaaCGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAgctgc                                                                                          <  1:927520/82‑1 (MQ=255)
                                                                                                aaaCGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTc                                      <  1:61203/134‑1 (MQ=255)
                                                                                                aaaCGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTc                                      >  2:61203/1‑134 (MQ=255)
                                                                                                 aaCGTAATTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCcatcat                                >  2:1575519/1‑139 (MQ=255)
                                                                                                      aaTTCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCCATCATCTGAc                           <  2:923599/139‑1 (MQ=255)
                                                                                                        ttCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCCATCATCTGACCg                         <  2:137688/139‑1 (MQ=255)
                                                                                                        ttCCAGTTGCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCCATCATCTGACCg                         >  1:137688/1‑139 (MQ=255)
                                                                                                                gCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCcatcat                                <  2:1232421/124‑1 (MQ=255)
                                                                                                                gCGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCcatcat                                >  1:1232421/1‑124 (MQ=255)
                                                                                                                 cGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAg                                                                                              >  2:1186710/1‑61 (MQ=255)
                                                                                                                 cGGATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAg                                                                                              <  1:1186710/61‑1 (MQ=255)
                                                                                                                   gATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAgctgc                                                                                          <  2:992375/63‑1 (MQ=255)
                                                                                                                   gATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAgctgc                                                                                          >  1:992375/1‑63 (MQ=255)
                                                                                                                   gATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGa                                                                                       >  1:902405/1‑66 (MQ=255)
                                                                                                                   gATACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGa                                                                                       <  2:902405/66‑1 (MQ=255)
                                                                                                                    aTACGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCCATCATCTGACCGACATCCTGCaaa             <  1:1575519/139‑1 (MQ=255)
                                                                                                                       cGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTg                                                                                                              >  2:580690/1‑39 (MQ=255)
                                                                                                                       cGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTg                                                                                                              <  1:580690/39‑1 (MQ=255)
                                                                                                                       cGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTg                                                                                                              >  2:1025325/1‑39 (MQ=255)
                                                                                                                       cGCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTg                                                                                                              <  1:1025325/39‑1 (MQ=255)
                                                                                                                        gCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAgctg                                                                                           <  2:465363/57‑1 (MQ=255)
                                                                                                                        gCCTTCGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAgctg                                                                                           >  1:465363/1‑57 (MQ=255)
                                                                                                                          cTTCGCCCGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGc       >  2:1135902/1‑139 (MQ=255)
                                                                                                                             cGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCa                                                               <  2:564523/80‑1 (MQ=255)
                                                                                                                             cGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCa                                                               >  1:564523/1‑80 (MQ=255)
                                                                                                                             cGCCAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTgc    >  1:1468013/1‑139 (MQ=255)
                                                                                                                               ccAGCACTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTgcgc  <  1:432456/139‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                     
TTGCGGGCGATTAAATTAGGGGCGATGTCATCGCCAATGCGAATATCGAGATCGACACCTTCATTGACCAAATCGACCAGTCGGTCTTCCACATCAAAACGTAATTCCAGTTGCGGATACGCCTTCGCCAGCGCTAATAACGCCGGAGCCACCACCTGTCGTCCAAAACCAAAGCTGCTGATAATACGCAGCATCCCCTGCGGCACCTGACGCACGTCAGAAAGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGC  >  NC_000913/1881331‑1881596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑