Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,210,944 G→A pseudogene (1845/2001 nt) yehQ → pseudogene

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,210,9440GA100.0% 247.6 / NA 75pseudogene (1845/2001 nt)yehQpseudogene
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (40/35);  total (40/35)

CGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCC  >  NC_000913/2210811‑2211079
                                                                                                                                     |                                                                                                                                       
cGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCt                                                                                                                                    <  2:1084470/139‑1 (MQ=255)
                                tCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATc                                                                                                    >  2:876218/1‑139 (MQ=255)
                                tCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATc                                                                                                    >  1:1578141/1‑139 (MQ=255)
                                   aCTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGc                                                                                                 <  2:1578141/139‑1 (MQ=255)
                                       cTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGc                                                                                             >  2:234444/1‑139 (MQ=255)
                                        tcatcaGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGca                                                                                            <  2:956356/139‑1 (MQ=255)
                                        tcatcaGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGca                                                                                            <  1:637574/139‑1 (MQ=255)
                                         catcaGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcac                                                                                           <  1:876218/139‑1 (MQ=255)
                                                               aGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTaa                                                                     <  1:234444/139‑1 (MQ=255)
                                                                 gCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATa                                                                   >  2:1154688/1‑139 (MQ=255)
                                                                     tACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGa                                                                                                                               >  2:955951/1‑75 (MQ=255)
                                                                     tACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGa                                                                                                                               <  1:955951/75‑1 (MQ=255)
                                                                               aCTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGt                                                                       >  2:1456643/1‑121 (MQ=255)
                                                                               aCTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGt                                                                       <  1:1456643/121‑1 (MQ=255)
                                                                                cTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCAc                                                    >  1:1576172/1‑139 (MQ=255)
                                                                                cTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCAc                                                    >  1:567283/1‑139 (MQ=255)
                                                                                  gCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAAt                                                                                                                             <  1:867026/64‑1 (MQ=255)
                                                                                  gCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAAt                                                                                                                             >  2:867026/1‑64 (MQ=255)
                                                                                  gCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACgg                                                  >  1:688158/1‑139 (MQ=255)
                                                                                   cTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTc                                                                         >  2:463141/1‑115 (MQ=255)
                                                                                   cTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTc                                                                         <  1:463141/115‑1 (MQ=255)
                                                                                        tAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTa                                                                                                      >  2:610848/1‑81 (MQ=255)
                                                                                        tAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTa                                                                                                      <  1:610848/81‑1 (MQ=255)
                                                                                        tAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGca                                                                                            <  2:1665794/91‑1 (MQ=255)
                                                                                        tAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGca                                                                                            >  1:1665794/1‑91 (MQ=255)
                                                                                        tAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGaa                                            >  1:1383269/1‑139 (MQ=255)
                                                                                           cGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCa                                         >  1:360979/1‑139 (MQ=255)
                                                                                             gCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACaa                                                                             <  2:1054017/101‑1 (MQ=255)
                                                                                             gCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGc                                                      >  1:51611/1‑124 (MQ=255)
                                                                                             gCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGc                                                      <  2:51611/124‑1 (MQ=255)
                                                                                             gCTGGCGCTATCAGGAACAGAGTACTATTGGTCAGGCATAATTGCt                                                                                                                                    <  1:60721/46‑1 (MQ=255)
                                                                                             gCTGGCGCTATCAGGAACAGAGTACTATTGGTCAGGCATAATTGCt                                                                                                                                    >  2:60721/1‑46 (MQ=38)
                                                                                             gCTGGCGCTATCAGAAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTATTATCGGCTGGCACATGTGTTGGGACaa                                                                             >  1:1054017/1‑101 (MQ=255)
                                                                                              cTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCgg                                                                                                                >  2:1030307/1‑65 (MQ=255)
                                                                                              cTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCgg                                                                                                                <  1:1030307/65‑1 (MQ=255)
                                                                                                ggCGCTATCAGGAACAGAGTGCTATTGGTCAGGCCTAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACCATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGaa                                    >  2:1605993/1‑139 (MQ=255)
                                                                                                ggCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATGATTGCTGGCGTATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcaca                                                                                          >  1:1104376/1‑85 (MQ=255)
                                                                                                ggCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAAt                                                                                                                             >  1:1379243/1‑50 (MQ=255)
                                                                                                ggCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAAt                                                                                                                             <  2:1379243/50‑1 (MQ=255)
                                                                                                ggCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcaca                                                                                          >  1:1648567/1‑85 (MQ=255)
                                                                                                ggCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcaca                                                                                          <  2:1648567/85‑1 (MQ=255)
                                                                                                ggCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcaca                                                                                          <  2:1104376/85‑1 (MQ=255)
                                                                                                   gcTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATaa                                 <  1:1154688/139‑1 (MQ=255)
                                                                                                              cAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGTTGGGTTTTTATCGGCTGGCACATgtgt                                                                                     <  2:1033538/76‑1 (MQ=255)
                                                                                                              cAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATgtgt                                                                                     >  1:1033538/1‑76 (MQ=255)
                                                                                                               agagTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTtttgct                     <  2:1576172/139‑1 (MQ=255)
                                                                                                                gagTGCTATTGGTCAGACATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCt                                                                                                <  1:268354/63‑1 (MQ=255)
                                                                                                                gagTGCTATTGGTCAGACATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCt                                                                                                >  2:268354/1‑63 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCgg                                                                                                                <  2:771902/46‑1 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCgg                                                                                                                >  1:771902/1‑46 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcaca                                                                                          <  2:852010/68‑1 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcaca                                                                                          >  1:852010/1‑68 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGa                                                                                >  2:540941/1‑78 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGa                                                                                <  1:540941/78‑1 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTtttgcttt                   >  2:1411221/1‑139 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTtttgcttt                   >  1:131211/1‑139 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTtttgcttt                   >  1:295311/1‑139 (MQ=255)
                                                                                                                   tGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcaca                                                                                          <  1:1453166/66‑1 (MQ=255)
                                                                                                                   tGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcaca                                                                                          >  2:1453166/1‑66 (MQ=255)
                                                                                                                   tGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAAtt                                                                           <  1:1303693/81‑1 (MQ=255)
                                                                                                                   tGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAAtt                                                                           >  2:1303693/1‑81 (MQ=255)
                                                                                                                   tGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCg                                                          <  2:880810/98‑1 (MQ=255)
                                                                                                                   tGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCg                                                          >  1:880810/1‑98 (MQ=255)
                                                                                                                     cTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGa               >  1:1439419/1‑139 (MQ=255)
                                                                                                                      tATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAg                                           <  2:1281313/110‑1 (MQ=255)
                                                                                                                      tATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAg                                           >  1:1281313/1‑110 (MQ=255)
                                                                                                                           gTCAGGCATAATTGCTGGCGAATGACCTCACcgcg                                                                                                                 <  1:1328145/35‑1 (MQ=255)
                                                                                                                           gTCAGGCATAATTGCTGGCGAATGACCTCACcgcg                                                                                                                 >  2:1328145/1‑35 (MQ=255)
                                                                                                                           gTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGt                                                                                                               >  2:80002/1‑37 (MQ=255)
                                                                                                                           gTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGt                                                                                                               <  1:80002/37‑1 (MQ=255)
                                                                                                                             cAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATaa                                 <  1:153419/113‑1 (MQ=255)
                                                                                                                             cAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATaa                                 >  2:153419/1‑113 (MQ=255)
                                                                                                                                gCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGc                                                                                                 >  2:272529/1‑46 (MQ=255)
                                                                                                                                gCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGc                                                                                                 <  1:272529/46‑1 (MQ=255)
                                                                                                                                  aTAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTcccc  <  2:295311/139‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                       
CGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCC  >  NC_000913/2210811‑2211079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑