| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,318,019 | G→A | R620C (CGT→TGT) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,318,019 | 0 | G | A | 100.0% | 237.4 / NA | 73 | R620C (CGT→TGT) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (36/37); total (36/37) | |||||||||||
ATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCGGGTCGCCATTTAAGGCCA > NC_000913/2317898‑2318147 | aTCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGa > 2:1643272/1‑124 (MQ=255) acccagaccGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCcgcg < 1:1077678/139‑1 (MQ=255) gTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCCGGGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGc > 2:345009/1‑139 (MQ=255) gTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACa < 2:1231068/135‑1 (MQ=255) gTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACa > 1:1231068/1‑135 (MQ=255) tCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAAt < 2:707258/117‑1 (MQ=255) tCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAAt > 1:707258/1‑117 (MQ=255) ggAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACtat < 2:1200370/139‑1 (MQ=255) ggAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACtat < 1:276013/139‑1 (MQ=255) aTTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCAGCCGCGCGAACATGCAAAACTATACAg > 2:1102427/1‑139 (MQ=255) tGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCcgcg > 2:152659/1‑111 (MQ=255) tGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCcgcg < 1:152659/111‑1 (MQ=255) ccGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCcgc > 1:177292/1‑98 (MQ=255) ccGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCcgc < 2:177292/98‑1 (MQ=255) ccGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTa > 2:1444213/1‑139 (MQ=255) ccGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTa > 2:261803/1‑139 (MQ=255) cTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCg < 1:1444213/139‑1 (MQ=255) gaagaaGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATg > 2:497919/1‑99 (MQ=255) gaagaaGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATg < 1:497919/99‑1 (MQ=255) gggATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAAc > 1:165549/1‑139 (MQ=255) gATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAAttt < 2:641447/121‑1 (MQ=255) gATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAAttt > 1:641447/1‑121 (MQ=255) tCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGt > 1:1307941/1‑139 (MQ=255) aGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATTGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGa < 2:74099/77‑1 (MQ=255) aGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATTGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGa > 1:74099/1‑77 (MQ=255) gcgcACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATaga < 1:647666/54‑1 (MQ=255) gcgcACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATaga > 2:647666/1‑54 (MQ=255) cgcACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATagag < 1:174786/54‑1 (MQ=255) cgcACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATagag > 2:174786/1‑54 (MQ=255) cgcACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGa > 2:303188/1‑139 (MQ=255) cgcACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGa > 1:836498/1‑139 (MQ=255) cgcACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGa > 2:48899/1‑139 (MQ=255) gcACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGAc < 2:165549/139‑1 (MQ=255) cacTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACa < 1:469573/122‑1 (MQ=255) cacTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACa > 2:469573/1‑122 (MQ=255) cacTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACctgc < 2:1053381/139‑1 (MQ=255) cacTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACctgc < 1:303188/139‑1 (MQ=255) acTTCTTTCGCCGGGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACctgc < 1:345009/139‑1 (MQ=255) cttcttTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCg > 1:600065/1‑95 (MQ=255) cttcttTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCg < 2:600065/95‑1 (MQ=255) cttcttTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACctgctg > 1:215040/1‑139 (MQ=255) cttTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGt > 1:913142/1‑108 (MQ=255) cttTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGt < 2:913142/108‑1 (MQ=255) tCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATgg < 2:996094/102‑1 (MQ=255) tCGCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATgg > 1:996094/1‑102 (MQ=255) gCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATg < 2:116552/65‑1 (MQ=255) gCC‑GGTATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATg > 1:116552/1‑65 (MQ=255) cc‑GGTATCCCCACGCCGGTATCGCGAACACAGATaga < 2:1408128/37‑1 (MQ=255) cc‑GGTATCCCCACGCCGGTATCGCGAACACAGATaga > 1:1408128/1‑37 (MQ=255) tATCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCggg > 2:332167/1‑139 (MQ=255) aTCCCCACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCGGGt < 2:836498/139‑1 (MQ=255) ccccACGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCGGGTCg < 1:111722/139‑1 (MQ=255) ccccACGCCGGTATCGCGAACACAGATAGAGAGATAAGCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCGGGTCg < 2:567793/139‑1 (MQ=255) aCGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCaa < 1:219133/98‑1 (MQ=255) aCGCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCaa > 2:219133/1‑98 (MQ=255) gCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGgaga > 2:381126/1‑107 (MQ=255) gCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGgaga < 1:381126/107‑1 (MQ=255) gCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCg < 2:812339/128‑1 (MQ=255) gCCGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCg > 1:812339/1‑128 (MQ=255) cGGTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCGGGTCGCCATTTaa < 2:215040/139‑1 (MQ=255) gTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCAt < 2:347256/122‑1 (MQ=255) gTATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCAt > 1:347256/1‑122 (MQ=255) tATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGc < 1:582917/60‑1 (MQ=255) tATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGc > 2:582917/1‑60 (MQ=255) tATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCg > 1:436743/1‑68 (MQ=255) tATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCg < 2:436743/68‑1 (MQ=255) tATCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCGGGTCGCCATTTAAGGc > 2:1235271/1‑139 (MQ=255) tCGCGAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCGGGTCGCCATTTAAGGCCa < 1:332167/139‑1 (MQ=255) tCGCGAACACAGATAGAGAGATAATCGCCAGCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTCTGGCGTTACTCAACATGTTGGAGATGTCCTGCTGTAAACGCATCGGGTCGCCATTTAAGGCCa < 1:1102427/139‑1 (MQ=255) cgAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATg > 2:739151/1‑41 (MQ=255) cgAACACAGATAGAGAGATAATCGCCATCCGCGCGAACATg < 1:739151/41‑1 (MQ=255) aaCACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCGGGTCGc < 1:145454/122‑1 (MQ=255) aaCACAGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCGGGTCGc > 2:145454/1‑122 (MQ=255) | ATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGATCAAACAAGCGCACCACTTCTTTCGCC‑GGTATCCCCACGCCGGTATCGCGAACACGGATAGAGAGATAATCGCCATCCGCGCGAACATGCAAAACTATACAGCCGGTATCGGTGAATTTTATGGCGTTACTCAACAGGTTGGAGATGACCTGCTGTAAACGCATCGGGTCGCCATTTAAGGCCA > NC_000913/2317898‑2318147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |