Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,742,599 Δ1 bp intergenic (‑67/‑134) yiaJ ← / → yiaK transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon/2,3‑diketo‑L‑gulonate reductase, NADH‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,742,5980C.100.0% 83.8 / NA 21intergenic (‑66/‑135)yiaJ/yiaKtranscriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon/2,3‑diketo‑L‑gulonate reductase, NADH‑dependent
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (13/8);  total (13/8)

TCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCAGATTGC  >  NC_000913/3742460‑3742640
                                                                                                                                          |                                          
tctGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAAc                                            >  1:825259/1‑139 (MQ=255)
   ggCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAAcaat                                         <  1:427878/139‑4 (MQ=255)
        ccGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGAtt                                   >  1:198551/1‑139 (MQ=255)
         cGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGAttt                                  >  1:754126/1‑139 (MQ=255)
              ggACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATg                             >  2:309509/1‑139 (MQ=255)
              ggACGCTCTTTTTCCTGCGCCATCACGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATg                             >  2:715091/1‑139 (MQ=255)
                        tttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGaaa                   <  2:603058/139‑1 (MQ=255)
                        tttCCTGCGCCATCTCGTTCTCTTTTTTTCCCAGCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCACGACAGATAATTTATAACAATTGATTTTTATGTCTTTGGaaa                   <  2:789386/139‑1 (MQ=255)
                              gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATtcatc             >  1:274812/1‑139 (MQ=255)
                              gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATtcatc             >  1:859619/1‑139 (MQ=255)
                               cgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATtcatca            <  1:217424/139‑1 (MQ=255)
                                gcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATATTTATGTCTTTTGAAATTCatcaa           >  2:595674/1‑139 (MQ=255)
                                gcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCACAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATTCatcaa           >  1:29740/1‑139 (MQ=255)
                                  cATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATTCatcaatc         <  1:998642/139‑1 (MQ=255)
                                  cATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATTCatcaatc         <  2:350983/139‑1 (MQ=255)
                                    tctcGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATTCatcaatcct       >  1:270479/1‑137 (MQ=255)
                                     ctcGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATTCatcaatcctg      >  1:754116/1‑136 (MQ=255)
                                      tcGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGCGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATTCatcaatcgtgt     <  2:679042/139‑5 (MQ=255)
                                         ttCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATTCatcaatcctgttga  >  1:204317/1‑132 (MQ=255)
                                                                 ttCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATtcatca            <  2:196995/105‑1 (MQ=255)
                                                                 ttCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATtcatca            >  1:196995/1‑105 (MQ=255)
                                                                                              cgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGaa                    <  1:630826/68‑1 (MQ=255)
                                                                                              cgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGaa                    >  2:630826/1‑68 (MQ=255)
                                                                                                                                          |                                          
TCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCAGATTGC  >  NC_000913/3742460‑3742640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: