| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,274,973 | C→T | T397M (ACG→ATG) | ychO → | putative invasin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,274,973 | 0 | C | T | 100.0% | 79.2 / NA | 26 | T397M (ACG→ATG) | ychO | putative invasin |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (14/12); total (14/12) | |||||||||||
TAACGGTGTTTCTGGCGACACCGCCGTGGGATCTAAAACCTGGCGAAACAGTGCCGCTGAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGACGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGGCAAGCAATCACTGGCGATTGTCTGTGGTGGTGGAAGATAACCAGGGGCAGCGTGTCTCCTCCAA > NC_000913/1274841‑1275108 | tAACGGTGTTTCTGGCGACACCGCCGTGGGATCTAAAACCTGGCGAAACAGTGCCGCTGAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCggg > 2:608115/1‑139 (MQ=255)tAACGGTGTTTCTGGCGACACCGCCGTGGGATCTAAAACCTGGCGAAACAGTGCCGCTGAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCggg > 1:859918/1‑139 (MQ=255) tCTGGCGACACCGCCGTGGGATCTAAAACCTGGCGAAACAGTGCCGCTGAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGcc < 2:375963/139‑1 (MQ=255) cgccgTGGGATCTAAAACCTGGCGAAACAGTGCCGCTGAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGa > 1:156400/1‑139 (MQ=255) ggATCTAAAACCTGGCGAAACAGTGCCGCTGAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTgg < 2:408251/139‑1 (MQ=255) tCTAAAACCTGGCGAAACAGTGCCGCTGAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACg < 1:608115/139‑1 (MQ=255) ggCGAAACAGTGCCGCTGAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGc > 1:94736/1‑139 (MQ=255) cAGTGCCGCTGAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATGAAGTTTGATGCCGGGCGCACAAGCCAATAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTg > 1:636508/1‑139 (MQ=255) taccGCTGAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGACCATGCCTGACTGGCa < 2:706358/137‑1 (MQ=255) cGCTGAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGaa < 2:156400/139‑1 (MQ=255) gAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACggg > 1:743506/1‑139 (MQ=255) cAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAgggg < 2:443746/139‑1 (MQ=255) tCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGgcaag > 2:177069/1‑139 (MQ=255) tACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAgggg < 1:278884/124‑1 (MQ=255) tACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAgggg > 2:278884/1‑124 (MQ=255) aTTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGGCAAGCAATCACTGGCGATTGt < 2:579324/139‑1 (MQ=255) tCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGGCAAGCAATCACTGGCGa < 1:969691/133‑1 (MQ=255) tCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGGCAAGCAATCACTGGCGa > 2:969691/1‑133 (MQ=255) tGATTTGGCAGGGCGATATGCAGATATTAATTTGGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGCCGCTGATCATGCCTGACTGGCAGAAGGGGGAAGGAGCAAGCAATCACTGGCGATTGCCTgtggtggt < 2:950440/139‑1 (MQ=255) ggCGATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGGCAAGCAATCACTGGCGATTGTCTGTGGTGGTGGAAGATAAcc > 1:778806/1‑139 (MQ=255) gATACGCAGATATTAAGTTTGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGGCAAGCAATCACTGGCGATTGTCTGTGGTGGTGGAAGATAACCAgg < 2:859918/139‑1 (MQ=255) tGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGgcaagcaa < 1:595420/82‑1 (MQ=255) tGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGgcaagcaa > 2:595420/1‑82 (MQ=255) tGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGGCAAGCAATCACTGGCGATTGTCTGTGGTGGTGGAAGATAACCAGGGGCAGCGTGTCTCCTCCaa > 1:396250/1‑139 (MQ=255) tGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGGCAAGCAATCACTGGCGATTGTCTGTGGTGGTGGAAGATAACCAGGGGCAGCGTGTCTCCTCCaa > 1:344312/1‑139 (MQ=255) tGATGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGGCAAGCAATCACTGGCGATTGTCTGTGGTGGTGGAAGATAACCAGGGGCAGCGTGTCTCCTCCaa > 2:85828/1‑139 (MQ=255) | TAACGGTGTTTCTGGCGACACCGCCGTGGGATCTAAAACCTGGCGAAACAGTGCCGCTGAAATTACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGACGCCGGGCGCACAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGGCAAGCAATCACTGGCGATTGTCTGTGGTGGTGGAAGATAACCAGGGGCAGCGTGTCTCCTCCAA > NC_000913/1274841‑1275108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |