| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,362,857 | A→G | T39A (ACC→GCC) | puuC → | gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase, succinate semialdehyde dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,362,857 | 0 | A | G | 98.4% | 218.0 / NA | 61 | T39A (ACC→GCC) | puuC | gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase, succinate semialdehyde dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (34/26); minor base C (1/0); total (35/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGTGAAACAGGAGTCATAATGAATTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAACCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGTCACTCTCTTCTCCGGCTAAACG > NC_000913/1362725‑1362990 | cGTGAAACAGGAGTCATAATGAATTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTg > 2:139274/1‑139 (MQ=255) gTGAAACAGGAGTCATAATGAATTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGa > 2:514478/1‑139 (MQ=255) tGAAACAGGAGTCATAATGAATTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGAt < 2:689834/139‑1 (MQ=255) cAGGAGTCATAATGAATTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGt < 1:308979/139‑1 (MQ=255) ggAGTCATAATGAATTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCa > 2:784850/1‑139 (MQ=255) gAGTCATAATGAATTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCAc > 1:801874/1‑139 (MQ=255) aGTCATAATGAATTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCAcc < 2:966751/139‑1 (MQ=255) gTCATAATGAATTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCAGTTGATCCGGTCAccc > 1:1019356/1‑139 (MQ=255) aTAATGAATTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAgg > 2:451031/1‑139 (MQ=255) aaTTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGc > 2:9578/1‑139 (MQ=255) atcTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATAC‑GCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAAtt > 2:596382/1‑139 (MQ=255) cTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTg > 1:103748/1‑139 (MQ=255) gCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGccc > 1:664010/1‑139 (MQ=255) gCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAag < 2:664010/139‑1 (MQ=255) gCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAag < 2:103748/139‑1 (MQ=255) aGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAagag > 1:957391/1‑139 (MQ=255) gCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGata > 1:886495/1‑139 (MQ=255) tAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGcc > 2:823049/1‑116 (MQ=255) tAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGcc < 1:823049/116‑1 (MQ=255) tAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCaa > 2:792141/1‑124 (MQ=255) tAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCaa < 1:792141/124‑1 (MQ=255) tAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGa > 2:903624/1‑139 (MQ=255) aaGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGAc > 2:19981/1‑139 (MQ=255) tGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGt > 1:1003371/1‑130 (MQ=255) tGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGt < 2:1003371/130‑1 (MQ=255) tatttattAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACgcgg < 1:100044/139‑1 (MQ=255) aaCGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTg < 1:139274/139‑1 (MQ=255) gTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAAcg > 2:567335/1‑139 (MQ=255) aaTATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACgcgg > 2:995263/1‑139 (MQ=255) aaTATACTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACgcgg > 1:995256/1‑139 (MQ=255) tataCTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTg < 1:710519/73‑1 (MQ=255) tataCTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTg > 2:710519/1‑73 (MQ=255) tataCTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACgcggcg < 1:9578/139‑1 (MQ=255) ataCTGCTGCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGa < 1:567335/139‑1 (MQ=255) ctgctgCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTg < 1:204170/69‑1 (MQ=255) ctgctgCGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTg > 2:204170/1‑69 (MQ=255) tgctgcGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAgcgc < 1:734581/108‑1 (MQ=255) tgctgcGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAgcgc > 2:734581/1‑108 (MQ=255) tgctgcGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTgg < 1:514478/139‑1 (MQ=255) tgctgcGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTgg > 1:315794/1‑139 (MQ=255) cgctgcGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTgg < 1:596382/138‑1 (MQ=255) gctgcGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGt > 1:517703/1‑139 (MQ=255) gctgcGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGt > 2:671856/1‑139 (MQ=255) ctgcGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGTc < 2:580003/139‑1 (MQ=255) ctgcGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGTc < 2:803567/139‑1 (MQ=255) tgcGGCGGAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGTCa > 1:458058/1‑139 (MQ=255) tgcGGCGGAAAATGAAACCTTTGAAGCCGTCGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGTCa > 2:668674/1‑139 (MQ=255) tgcGGCGGAAAATGAAACCTTTGAAGCCGCTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTgg > 1:150440/1‑136 (MQ=255) tgcGGCGGAAAATGAAACCTTTGAAGCCGCTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTgg < 2:150440/136‑1 (MQ=255) cggcggAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGTCAct > 1:818623/1‑139 (MQ=255) cggcggAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCAGCGACTGGTCAct > 2:366397/1‑139 (MQ=255) aggcggTAAATGAAACCTTTTAACCCGTTGAACCGGTCACCCAGGCACCGCTGGCGAAAATCGCCCGCGGCAAGAGCGTGTATCTCGACCGTGCGATGAGCCGAGCACGCGGGGTATTTGAACGCGGGGACTGGTCCct > 2:264969/2‑139 (MQ=255) ggcggAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCACAGCACGCGGCGTATTTGAACGCGGCGACTGGTCActc < 1:19981/139‑1 (MQ=255) gcggAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCAcg < 1:300533/107‑1 (MQ=255) gcggAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCAcg > 2:300533/1‑107 (MQ=255) gAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGTCAct > 1:299496/1‑134 (MQ=255) gAAAATGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGTCAct < 2:299496/134‑1 (MQ=255) aaaTGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACgcggcg > 2:672999/1‑122 (MQ=255) aaaTGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACgcggcg < 1:672999/122‑1 (MQ=255) aaTGAAACCTTTGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGTCACTCTCTtctc < 2:251478/139‑1 (MQ=255) ttGAAGCCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGTCACTCTCTTCTCCGGCTAAACg < 2:801874/139‑1 (MQ=255) | CGTGAAACAGGAGTCATAATGAATTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTATTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAACCGTTGATCCGGTCACCCAGGCACCGCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTTGAACGCGGCGACTGGTCACTCTCTTCTCCGGCTAAACG > NC_000913/1362725‑1362990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |