| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,712,518 | (C)6→8 | intergenic (+360/‑251) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,712,512 | 1 | . | C | 79.0% | 46.9 / 9.0 | 19 | intergenic (+354/‑257) | nth/dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base C (8/7); total (10/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.96e-01 | |||||||||||
| * | NC_000913 | 1,712,512 | 2 | . | C | 79.0% | 47.8 / 9.0 | 19 | intergenic (+354/‑257) | nth/dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base C (8/7); total (10/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.96e-01 | |||||||||||
GGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑‑CCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGA > NC_000913/1712380‑1712636 || ggTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑‑cccccc < 2:578390/139‑1 (MQ=255) aTTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGGGAAATAGCAGAACATATCTCCGTTAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGGCGTTACGTTTTTTGAAAAATTTaa > 2:262340/1‑139 (MQ=255) cacTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCt > 1:465044/1‑139 (MQ=255) cacTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑‑CCCCCCcctctca > 1:272121/1‑89 (MQ=255) cacTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑‑CCCCCCcctctca < 2:272121/92‑4 (MQ=255) tGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGa > 1:50103/1‑139 (MQ=255) cACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCCTCTCAGTGCAGGGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTccc < 1:423165/139‑1 (MQ=255) aGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGTATGGTTGAATTCCCCGcc < 2:465044/139‑1 (MQ=255) aGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGcc < 2:50103/139‑1 (MQ=255) aaaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑‑CCCCCCcctct < 2:804876/52‑2 (MQ=255) aaaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑‑CCCCCCcctct > 1:804876/1‑51 (MQ=255) aaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc > 1:371090/1‑134 (MQ=255) aaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTGGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc < 2:371090/134‑1 (MQ=255) aCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAAc < 1:671412/94‑1 (MQ=255) aCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAAc > 2:671412/1‑94 (MQ=255) cGTTAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTaa < 2:286966/122‑1 (MQ=255) cGTTAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTaa > 1:286966/1‑122 (MQ=255) cGTTAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGa > 2:179895/1‑139 (MQ=255) ttAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTaa < 1:729751/67‑1 (MQ=255) ttAAGCCATCACCCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTaa > 2:729751/1‑67 (MQ=255) || GGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑‑CCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGA > NC_000913/1712380‑1712636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |