| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,462,897 | (T)7→8 | intergenic (‑237/+157) | nrdD ← / ← treC | anaerobic ribonucleoside‑triphosphate reductase/trehalose‑6‑P hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,462,890 | 1 | . | T | 100.0% | 113.2 / NA | 36 | intergenic (‑230/+164) | nrdD/treC | anaerobic ribonucleoside‑triphosphate reductase/trehalose‑6‑P hydrolase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (18/18); total (18/18) | |||||||||||
TTTCGTGGGGAGCTGTAGTAGCAATTATAGTCGATTAATACAACATATTGGGTTGGGACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGC‑TTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACTGACAGACA > NC_000913/4462785‑4463012 | tttCGTGGGGAGCTGTAGTAGCAATTATAGTCGATTAATACAACATATTGGGTTGGGACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCaga < 2:155217/139‑1 (MQ=255) gggAGCTGTAGTAGCAATTATAGTCGATTAATACAACATATTGGGTTGGGACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACg > 2:637025/1‑139 (MQ=255) gCTGTAGTAGCAATTGTAGTCGATTAATACAACAAATTGGGTTGGGACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATg > 2:225917/1‑139 (MQ=255) agtagCAATTATAGTCGATTAATACAACATATTGGGTTGGGACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACggg < 2:137502/139‑1 (MQ=255) gtagCAATTATAGTCGATTAATACAACATATTGGGTTGGGACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGgc < 1:664008/139‑1 (MQ=255) tagCAATTATAGTCGATTAATACAACATATTGGGTTGGGACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGgcg < 1:637025/139‑1 (MQ=255) tgggttgggACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGgcg < 1:449159/109‑1 (MQ=255) tgggttgggACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGgcg > 2:449159/1‑109 (MQ=255) tgggttgggACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAAt > 1:477146/1‑139 (MQ=255) gttgggACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTg > 1:447256/1‑139 (MQ=255) tgggACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACggg > 1:37283/1‑102 (MQ=255) tgggACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACggg < 2:37283/102‑1 (MQ=255) ggACGCATTTTAAAGTCTATATATAGTGCATTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTCAAAAGCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTgg > 1:560664/1‑139 (MQ=255) cATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGaa > 2:477324/1‑139 (MQ=255) aGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATcaac < 1:477324/139‑1 (MQ=255) tCTATATATAGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATcaacaa < 2:161554/139‑1 (MQ=255) aGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTa < 2:465760/65‑1 (MQ=255) aGTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTa > 1:465760/1‑65 (MQ=255) gTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTa < 2:325575/64‑1 (MQ=255) gTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTa > 1:325575/1‑64 (MQ=255) gTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACggg < 2:281445/75‑1 (MQ=255) gTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACggg > 1:281445/1‑75 (MQ=255) gTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGCg < 2:836749/85‑1 (MQ=255) gTGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGCg > 1:836749/1‑85 (MQ=255) tGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCa < 1:496352/56‑1 (MQ=255) tGCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCa > 2:496352/1‑56 (MQ=255) gCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCg > 1:81162/1‑60 (MQ=255) gCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCg < 2:81162/60‑1 (MQ=255) gCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGc > 1:615025/1‑82 (MQ=255) gCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGc < 2:615025/82‑1 (MQ=255) gCTTTGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACt > 2:477476/1‑139 (MQ=255) tttGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCa > 2:305603/1‑53 (MQ=255) tttGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCa < 1:305603/53‑1 (MQ=255) tGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTAc > 2:328134/1‑59 (MQ=255) tGCATCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTAc < 1:328134/59‑1 (MQ=255) tCAAGGATGTTTGAGCTTTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACTgacagaca < 1:477476/139‑1 (MQ=255) | TTTCGTGGGGAGCTGTAGTAGCAATTATAGTCGATTAATACAACATATTGGGTTGGGACGCATTTTAAAGTCTATATATAGTGCTTTGCATCAAGGATGTTTGAGC‑TTTTTTTGATGTAGCTCAAAGTAAAAAGCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACTGACAGACA > NC_000913/4462785‑4463012 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |