| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,862,524 | Δ3 bp | pseudogene (1078‑1080/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3862524 | 3862526 | 3 | 35 [0] | [0] 33 | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3862523 | 0 (0.000) | 33 (0.980) | 29/206 | 0.2 | 100% | pseudogene (1081/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| ? | NC_000913 | 3862527 = | 0 (0.000) | pseudogene (1077/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component | |||||
GAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGT > NC_000913/3862392‑3862661 | tgcggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcacc > 1:383058‑M2/136‑139 (MQ=255) aaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacacca < 2:383058‑M2/10‑1 (MQ=255) ggtaaagcacaacccaatggcgatttgggtcagcatcatatctgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTAc < 1:262172‑M2/24‑1 (MQ=255) ggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAAATACATTAc > 2:262172‑M2/111‑134 (MQ=255) taaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacacca > 1:215670‑M2/109‑118 (MQ=255) taaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacacca < 2:215670‑M2/10‑1 (MQ=255) taaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGAc > 2:75870‑M2/109‑139 (MQ=255) aacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCaaa > 2:717311‑M2/101‑112 (MQ=255) aacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCaaa < 1:717311‑M2/12‑1 (MQ=255) cccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTAc > 1:617400‑M2/99‑122 (MQ=255) cccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTAc < 2:617400‑M2/24‑1 (MQ=255) tggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGc < 1:75870‑M2/46‑1 (MQ=255) cgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACg > 2:289251‑M2/91‑139 (MQ=255) cgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACg < 1:289251‑M2/71‑1 (MQ=255) gcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACgg > 2:548008‑M2/68‑139 (MQ=255) cgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGc > 1:480225‑M2/67‑117 (MQ=255) cgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaagcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGc < 2:480225‑M2/51‑1 (MQ=255) aacattgggatccatttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAg < 2:676648‑M2/84‑1 (MQ=255) tcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCa < 2:196959‑M2/61‑1 (MQ=255) tcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCa > 1:196959‑M2/52‑112 (MQ=255) cgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACg < 1:704563‑M2/49‑1 (MQ=255) cgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACg > 2:704563‑M2/51‑99 (MQ=255) gatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCgt > 2:287146‑M2/48‑100 (MQ=255) gatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCgt < 1:287146‑M2/53‑1 (MQ=255) tgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCgg < 2:114233‑M2/102‑1 (MQ=255) cggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGtt > 1:776791‑M2/36‑139 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAgg > 2:309269‑M2/19‑103 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAgg < 1:309269‑M2/85‑1 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGGTCGGTAATTCCCACCAGc > 2:786555‑M2/19‑139 (MQ=255) cagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGtt < 1:684014‑M2/104‑1 (MQ=255) cagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGtt > 2:684014‑M2/18‑121 (MQ=255) gacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATg < 2:776791‑M2/124‑1 (MQ=255) tgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGt > 1:649347‑M2/5‑139 (MQ=255) | GAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGT > NC_000913/3862392‑3862661 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |