| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,619,478 | Δ9 bp | coding (1250‑1258/1323 nt) | deoA → | thymidine phosphorylase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4619478 | 4619486 | 9 | 52 [0] | [0] 52 | deoA | thymidine phosphorylase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4619477 | 0 (0.000) | 45 (1.450) | 32/190 | 0.1 | 100% | coding (1249/1323 nt) | deoA | thymidine phosphorylase |
| ? | NC_000913 | 4619487 = | 0 (0.000) | coding (1259/1323 nt) | deoA | thymidine phosphorylase | |||||
GCGTCGGCTTTACTGATATGGCGCGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGCGAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTA > NC_000913/4619367‑4619621 | tcgattacagcgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATaa > 2:615959‑M2/121‑139 (MQ=255) cgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGaa > 2:265964‑M2/111‑139 (MQ=255) cgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGaa > 1:356991‑M2/111‑139 (MQ=255) cggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGc > 2:28475‑M2/108‑139 (MQ=255) ggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGca > 2:406409‑M2/107‑139 (MQ=255) actgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGca > 1:762338‑M2/101‑133 (MQ=255) actgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGca < 2:762338‑M2/33‑1 (MQ=255) atggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCt > 1:108932‑M2/95‑139 (MQ=255) gcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATc > 1:72815‑M2/92‑139 (MQ=255) tctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGt > 2:787665‑M2/87‑139 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 2:108932‑M2/62‑1 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 1:265964‑M2/62‑1 (MQ=255) aggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATa < 2:209520‑M2/64‑1 (MQ=255) ggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa < 1:663379‑M2/65‑1 (MQ=255) tagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg < 2:137691‑M2/67‑1 (MQ=255) acggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGta < 2:293924‑M2/70‑1 (MQ=255) cagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa > 2:291281‑M2/65‑129 (MQ=255) cagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa < 1:291281‑M2/65‑1 (MQ=255) agcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCaa < 2:98948‑M2/39‑1 (MQ=255) agcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg < 2:405440‑M2/67‑1 (MQ=255) agcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg > 1:405440‑M2/64‑130 (MQ=255) agcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATActga > 1:314086‑M2/64‑139 (MQ=255) agcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATActga > 1:38569‑M2/64‑139 (MQ=255) agcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGAACACCaa > 1:98948‑M2/64‑102 (MQ=255) gcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATActgat < 1:787665‑M2/77‑1 (MQ=255) gcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATActgat < 1:615959‑M2/77‑1 (MQ=255) tccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATActgatctg > 2:255837‑M2/60‑139 (MQ=255) ccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggagaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATActgatctga < 1:255837‑M2/81‑1 (MQ=255) ctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 2:474424‑M2/62‑1 (MQ=255) ctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa > 1:474424‑M2/56‑117 (MQ=255) gcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCAttt < 2:310583‑M2/87‑1 (MQ=255) cgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 1:330474‑M2/62‑1 (MQ=255) cgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa > 2:330474‑M2/42‑103 (MQ=255) cgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGt > 2:694927‑M2/40‑82 (MQ=255) cgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGt < 1:694927‑M2/43‑1 (MQ=255) cgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCAc < 2:356991‑M2/100‑1 (MQ=255) gaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACt < 2:314086‑M2/101‑1 (MQ=255) aaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg < 1:452160‑M2/67‑1 (MQ=255) aaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg > 2:452160‑M2/31‑97 (MQ=255) aacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGgag < 1:28475‑M2/111‑1 (MQ=255) ctggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGgag > 2:662337‑M2/24‑134 (MQ=255) ctggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGgag < 1:662337‑M2/111‑1 (MQ=255) gcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATg > 2:740830‑M2/21‑139 (MQ=255) cggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg < 1:478923‑M2/67‑1 (MQ=255) cggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg > 2:478923‑M2/13‑79 (MQ=255) aagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAAt < 1:555411‑M2/63‑1 (MQ=255) aagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg < 1:769342‑M2/67‑1 (MQ=255) aagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg > 2:769342‑M2/7‑73 (MQ=255) aagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCAGTATCAGCGAAt > 2:555411‑M2/7‑69 (MQ=255) gcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa < 2:602547‑M2/65‑1 (MQ=255) gcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa > 1:602547‑M2/5‑69 (MQ=255) gcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATttatta < 2:72815‑M2/135‑1 (MQ=255) | GCGTCGGCTTTACTGATATGGCGCGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGCGAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTA > NC_000913/4619367‑4619621 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |