| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,377,189 | C→T | H105H (CAC→CAT) *178* (TAG→TAA) |
sugE → blc ← |
multidrug efflux system protein outer membrane lipoprotein cell division and growth lipocalin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,377,189 | 0 | C | T | 100.0% | 99.9 / NA | 32 | H105H (CAC→CAT) *178* (TAG→TAA) | sugE blc | multidrug efflux system protein outer membrane lipoprotein cell division and growth lipocalin |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (15/17); total (15/17) | |||||||||||
GTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAGTATCCACA > NC_000913/4377057‑4377310 | gtgGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCattaacta > 1:169104/1‑139 (MQ=255) aCGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCATTAACTACCAg > 2:484679/1‑139 (MQ=255) aCGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCATTAACTACCAg < 1:484679/139‑1 (MQ=255) cgcgGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCaaataaat > 2:638049/1‑139 (MQ=255) ccATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACt < 1:153497/139‑1 (MQ=255) cATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGACTGGCGAGTCTGGCGTTAACCGTATTGGGGATTATCGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCAAAATAAATTTCCTGACATCAAAc > 1:484992/1‑139 (MQ=255) ctCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCaaa < 2:627785/128‑1 (MQ=255) ctCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCaaa > 1:627785/1‑128 (MQ=255) tGAGTCCGCTAACCCGATGTGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCATTAACTACCAgg < 1:368324/90‑1 (MQ=255) tGAGTCCGCTAACCCGATGTGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCATTAACTACCAgg > 2:368324/1‑90 (MQ=255) tGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTcgcg > 2:634308/1‑139 (MQ=255) tCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGgctgct < 2:706083/91‑1 (MQ=255) tCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGgctgct > 1:706083/1‑91 (MQ=255) cGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCAtctc < 1:634308/139‑1 (MQ=255) cGAGTCTGGCGTTAATCGTATTGAGGATTATTGGTCTGAAACTCATCACTCGTTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTGCCCGGGTCGCGACTGCCAGCATCTGCTGTTTCACTTc < 2:484992/139‑1 (MQ=255) ggggATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGTGACTGCCAGCATCTCCTGTTTCACTTCGt < 1:77321/119‑1 (MQ=255) ggggATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGTGACTGCCAGCATCTCCTGTTTCACTTCGt > 2:77321/1‑119 (MQ=255) gggATTATTGGTCTGAAACTCAGCACTCATTAACTACCAgg < 1:574795/41‑1 (MQ=255) gggATTATTGGTCTGAAACTCAGCACTCATTAACTACCAgg > 2:574795/1‑41 (MQ=255) ggATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAAc < 2:340199/74‑1 (MQ=255) ggATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAAc > 1:340199/1‑74 (MQ=255) gATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCtt > 2:378651/1‑77 (MQ=255) gATTATTGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCtt < 1:378651/77‑1 (MQ=255) ttattGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGagag < 1:638049/139‑1 (MQ=255) tattGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTa < 2:78431/44‑1 (MQ=255) tattGGTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTa > 1:78431/1‑44 (MQ=255) ggTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAGTATcc < 2:624630/139‑1 (MQ=255) gTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTg > 2:390895/1‑84 (MQ=255) gTCTGAAACTCAGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTg < 1:390895/84‑1 (MQ=255) aGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTg < 2:312496/73‑1 (MQ=255) aGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTg > 1:312496/1‑73 (MQ=255) aGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAGTATCcaca < 2:482967/130‑1 (MQ=255) aGCACTCATTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAGTATCcaca > 1:482967/1‑130 (MQ=255) | GTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAGTATCCACA > NC_000913/4377057‑4377310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |