| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,741,640 | (T)6→7 | coding (228/1149 nt) | cfa → | cyclopropane fatty acyl phospholipid synthase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,741,634 | 1 | . | T | 100.0% | 118.5 / NA | 38 | M74I (ATG→ATT) | cfa | cyclopropane fatty acyl phospholipid synthase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (18/20); total (18/20) | |||||||||||
TATAGCCATTAACGGTTCTGCCCCGGCGGATATTCGTGTGAAAAACCCCGATTTTTTTAAACGCGTTCTGCAAGAAGGCTCTTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATG‑TTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTAAAAAACGTGCCTGGATAGTCGGCAAAGAGC > NC_000913/1741496‑1741767 | tataGCCATTAACGGTTCTGCCCCGGCGGATATTCGTGTGAAAAACCCCGATTTTTTTAAACGCGTTCTGCAAGAAGGCTCTTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATg > 2:216161/1‑139 (MQ=255) aaCGGTTCTGCCCCGGCGGATATTCGTGTGAAAAACCCCGATTTTTTTAAACGCGTTCTGCAAGAAGGCTCTTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATG‑tttttttagc > 2:631100/1‑135 (MQ=255) tGCCCCGGCGGATATTCGTGTGAAAAACCCCGATTTTTTTAAACGCGTTCTGCAAGAAGGCTCTTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCtt < 1:631100/139‑1 (MQ=255) cccGGCGGATATTCGTGTGAAAAACCCCGATTTTTTTAAACGCGTTCTGCAAGAAGGCTCTTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTAcg < 1:216161/139‑1 (MQ=255) cggcggATATTCGTGTGAAAAACCCCGATTTTTTTAAACGCGTTCTGCAAGAAGGCTCTTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTAcgcg < 1:406281/139‑1 (MQ=255) tatTCGTGTGAAAAACCCCGATTTTTTTAAACGCGTTCTGCAAGAAGGCTCTTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGtct > 2:141812/1‑139 (MQ=255) gtgtGAAAAACCCCGATTTTTTTAAACGCGTTCTGCAAGAAGGCTCTTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTATGCGCAGGTCTCgaga < 2:92668/139‑1 (MQ=255) gtgtGAAAAACCCCGATTTTTTTAAACGCGTTCTGCAAGAAGGCTCTTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCgaga < 1:916955/139‑1 (MQ=255) aTTTTTTTAAACGCGTTCTGCAAGAAGGCTCTTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCcatc < 2:305438/139‑1 (MQ=255) agaagGCTCTTTGGGGGTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTAt > 2:573397/1‑139 (MQ=255) ctctTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACgcgc < 1:255602/85‑1 (MQ=255) ctctTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACgcgc > 2:255602/1‑85 (MQ=255) ctctTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCgg > 1:534029/1‑139 (MQ=255) ctTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCa < 2:969561/98‑1 (MQ=255) ctTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCa > 1:969561/1‑98 (MQ=255) aGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTAcgcg < 1:704321/72‑1 (MQ=255) aGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTAcgcg > 2:704321/1‑72 (MQ=255) ggCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGtct < 2:5808/78‑1 (MQ=255) ggCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGtct > 1:5808/1‑78 (MQ=255) gCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCa < 1:130636/139‑1 (MQ=255) tatGGATGGCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCagag > 1:963387/1‑139 (MQ=255) ggCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCca < 2:462104/78‑1 (MQ=255) ggCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCca > 1:462104/1‑78 (MQ=255) ggCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTaaaaaa > 1:247592/1‑139 (MQ=255) ggCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTaaaaaa > 1:1006787/1‑139 (MQ=255) ggCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTaaaaaa > 2:50664/1‑139 (MQ=255) ggCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTaaaaaa < 2:467478/139‑1 (MQ=255) ggCTGGTGGGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTaaaaaa > 1:467478/1‑139 (MQ=255) gtggGAATGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTAAAAAACGTGc > 2:220301/1‑139 (MQ=255) aTGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTAAAAAACGTGCCTGGAt > 1:662663/1‑139 (MQ=255) aTGTGACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTAAAAAACGTGCCTGGAt < 2:963387/139‑1 (MQ=255) tgtgACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCag > 2:158215/1‑118 (MQ=255) tgtgACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCag < 1:158215/118‑1 (MQ=255) tgACCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATGATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTAAAAAACGTGCCTGGATAGt < 1:929438/139‑1 (MQ=255) aCCGACTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTAAAAAACGTGCCTGGATAGTCg > 1:687099/1‑139 (MQ=255) cTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTAAAAAACGTGCCTGGATAGTCGGCaaa < 2:247592/139‑1 (MQ=255) cTGGATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGATCGTCTCTTCAATCTGCAGAGTAAAAAACGTGCCTGGATAGTCGGCaaa < 2:534029/139‑1 (MQ=255) gATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTg > 1:912198/1‑103 (MQ=255) gATATGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTg < 2:912198/103‑1 (MQ=255) atatGTTTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTAAAAAACGTGCCTGGATAGTCGGCAAAGAGc < 2:761935/139‑1 (MQ=255) | TATAGCCATTAACGGTTCTGCCCCGGCGGATATTCGTGTGAAAAACCCCGATTTTTTTAAACGCGTTCTGCAAGAAGGCTCTTTGGGGTTAGGCGAAAGTTATATGGATGGCTGGTGGGAATGTGACCGACTGGATATG‑TTTTTTAGCAAAGTCTTACGCGCAGGTCTCGAGAACCAACTCCCCCATCATTTCAAAGACACGCTGCGTATTGCCGGCGCTCGTCTCTTCAATCTGCAGAGTAAAAAACGTGCCTGGATAGTCGGCAAAGAGC > NC_000913/1741496‑1741767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |