| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,018,530 | (C)6→7 | coding (145/1128 nt) | fliK → | flagellar hook‑length control protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,018,524 | 1 | . | C | 100.0% | 94.5 / NA | 27 | A47P (GCC→CCC) | fliK | flagellar hook‑length control protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (14/13); total (14/13) | |||||||||||
CTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCAT > NC_000913/2018403‑2018648 | cTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCtggt < 1:496089/139‑1 (MQ=255) aTTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑cccccccag < 2:116698/127‑4 (MQ=255) aTTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑cccccccag > 1:116698/1‑124 (MQ=255) accaccacATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGAt < 2:615471/127‑1 (MQ=255) accaccacATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGAt > 1:615471/1‑127 (MQ=255) ccacATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCaa > 2:986977/1‑118 (MQ=255) ccacATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCaa < 1:986977/118‑1 (MQ=255) caTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑c < 1:3309/94‑1 (MQ=255) caTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑c > 2:3309/1‑94 (MQ=255) ccTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCa < 2:529471/109‑1 (MQ=255) ccTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCa > 1:529471/1‑109 (MQ=255) ggcggcAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTg > 2:522833/1‑139 (MQ=255) aaGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCg > 2:409079/1‑139 (MQ=255) cacaAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGAcg < 1:409079/139‑1 (MQ=255) gAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCt < 2:458329/139‑1 (MQ=255) cATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTgg > 2:189311/1‑139 (MQ=255) aTTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGa < 1:189311/139‑1 (MQ=255) tAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATg > 1:979439/1‑139 (MQ=255) cAGGCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGaaa < 2:979439/139‑1 (MQ=255) ggCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaaca > 1:730769/1‑108 (MQ=255) ggCGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaaca < 2:730769/108‑1 (MQ=255) cGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAg < 1:733115/108‑1 (MQ=255) cGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAg > 2:733115/1‑108 (MQ=255) cGAGACAACTACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACAcc > 2:232530/1‑139 (MQ=255) tACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCaa < 1:962369/36‑1 (MQ=255) tACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCaa > 2:962369/1‑36 (MQ=37) tACCGACAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGtcat > 2:831953/1‑139 (MQ=255) aCAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCt > 2:282480/1‑129 (MQ=255) aCAAAGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCt < 1:282480/129‑1 (MQ=255) aGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAAt > 2:213613/1‑95 (MQ=255) aGCGGCCCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAAt < 1:213613/95‑1 (MQ=255) | CTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑CCCCCCAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCAT > NC_000913/2018403‑2018648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |