New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1286708 =	23 (0.520)	21 (0.590)	12/174	1.4	60.4%	intergenic (+182/+358)	narI/rttR	nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript
	?	NC_000913	= 1287241	9 (0.250)					intergenic (‑5/+3)	rttR/tyrV	rtT sRNA, processed from tyrT transcript/tRNA‑Tyr

CCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGATGGTGGTGGG  >  NC_000913/1287120‑1287372                                                                                                                          |                                                                                                                                    ccTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGGTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGAGTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaag                                                                                                                    <  1:335284‑M2/139‑18 (MQ=255)                                    aaCCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcg                                                                                            >  1:443401‑M2/1‑87 (MQ=255)                                    aaCCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcg                                                                                            <  2:443401‑M2/128‑42 (MQ=255)                                          aatcgAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTga                                                                                                                                   <  1:146303‑M2/81‑3 (MQ=255)                                          aatcgAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTga                                                                                                                                   >  2:146303‑M2/3‑81 (MQ=255)                                                 gCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcg                                                                                            >  1:480391‑M2/1‑74 (MQ=255)                                                 gCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcg                                                                                            <  2:480391‑M2/115‑42 (MQ=255)                                                 gCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                                                                                                       >  2:832968‑M2/1‑74 (MQ=255)                                                 gCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                                                                                                       <  1:832968‑M2/88‑15 (MQ=255)                                                                      gggCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcg                                                                                     <  2:825975‑M2/101‑49 (MQ=255)                                                                      gggCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcg                                                                                     >  1:825975‑M2/1‑53 (MQ=255)                                                                        gCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcctgcggcaacgctctctcgctggcgct                                                 <  1:514260‑M2/135‑85 (MQ=255)                                                                        gCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcctgcggcaacgctctctcgctggcgct                                                 >  2:514260‑M2/1‑51 (MQ=255)                                                                                 ttAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcctgcggcaacgctctctcgctggcgctcgagccgaacctt                                    <  1:338893‑M2/139‑98 (MQ=255)                                                                                  tAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggt                                                                                                                               <  2:909946‑M2/47‑7 (MQ=255)                                                                                  tAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggt                                                                                                                               >  1:909946‑M2/1‑41 (MQ=255)                                                                                       gCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcctgcggcaacgctctctcgctggcgctcgagccgaaccttaatcga                              >  2:338893‑M2/1‑36 (MQ=255)                                                                                        cGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcctgcggcaacgctctctcgctggcgctcgagccgaaccttaatcga                              <  2:619157‑M2/138‑104 (MQ=255)                                                                                        cGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcctgcggcaacgctctctcgctggcgctcgagccgaaccttaatcga                              >  1:619157‑M2/1‑35 (MQ=255)                                                                                          gATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgcggcgcgcttcgcccttcgggtcgttgcctgcggcaacgctctctcgctggcgctcgagccgaaccttaatcgaatc                           <  1:837627‑M2/139‑107 (MQ=255)                                                                                          gATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcg                                                                                                        >  1:421080‑M2/1‑33 (MQ=255)                                                                                          gATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcg                                                                                                        <  2:421080‑M2/62‑30 (MQ=255)                                                                                          gATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                                                                                                       >  1:267743‑M2/1‑33 (MQ=255)                                                                                          gATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                                                                                                       <  2:267743‑M2/47‑15 (MQ=255)                                                                                           attcgcttgagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTT‑‑AGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAgg                        <  2:239388/128‑1 (MQ=18)                                                                                             tCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcctgcggcaacgctctctcgctggcgctcgagccgaaccttaatcgaagcttc                        >  2:335284‑M2/1‑30 (MQ=255)                                                                                              cgcttgagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGt                       <  1:766197/131‑1 (MQ=255)                                                                                               gcttgagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTa                      <  2:837627/132‑1 (MQ=255)                                                                                                ttGGGAATTTCAGGGATTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcctgcggcaacgctctctcgctggcgctcgagccgaaccttaatcgaagcttctca                     >  1:937518‑M2/1‑27 (MQ=255)                                                                                                       gTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcctgcggcaacgctctctcg                                                         <  1:580762‑M2/96‑77 (MQ=255)                                                                                                       gTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcctgcggcaacgctctctcg                                                         >  2:580762‑M2/1‑20 (MQ=255)                                                                                                       gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAgg                        >  1:828060/1‑129 (MQ=255)                                                                                                       gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAgg                        <  2:828060/129‑1 (MQ=255)                                                                                                       gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTga              >  2:876034/1‑139 (MQ=255)                                                                                                         tCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTgaga            <  2:826564/139‑1 (MQ=255)                                                                                                           aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGAtg          <  1:876034/139‑1 (MQ=255)                                                                                                                   ttGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcctgc                                                                        >  2:225346‑M2/1‑8 (MQ=255)                                                                                                                   ttGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcgttgcctgc                                                                        <  1:225346‑M2/69‑62 (MQ=255)                                                                                                                   ttGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGATGGTGGTggg  >  2:299769/1‑139 (MQ=255)                                                                                                                          |                                                                                                                                    CCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGATGGTGGTGGG  >  NC_000913/1287120‑1287372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.