Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,210,944 G→A pseudogene (1845/2001 nt) yehQ → pseudogene

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,210,9440GA100.0% 97.9 / NA 31pseudogene (1845/2001 nt)yehQpseudogene
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (16/15);  total (16/15)

CGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAA  >  NC_000913/2210811‑2211067
                                                                                                                                     |                                                                                                                           
cGCTACCTTCTGCCAGCGTATTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATCCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCt                                                                                                                        <  1:661131/139‑1 (MQ=255)
               gCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCAc                                                                                                         >  2:390116/1‑139 (MQ=255)
                    ttGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCgg                                                                                                    <  2:626914/139‑1 (MQ=255)
                    ttGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCgg                                                                                                    <  2:170998/139‑1 (MQ=255)
                                                            gCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCgg                                                                                                    <  1:115502/99‑1 (MQ=255)
                                                            gCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCgg                                                                                                    >  2:115502/1‑99 (MQ=255)
                                                            gCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGAGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCg                                                            >  1:81310/1‑139 (MQ=255)
                                                                               aCTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCa                                         >  2:748140/1‑139 (MQ=255)
                                                                                cTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCa                                         >  2:597177/1‑138 (MQ=255)
                                                                                cTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCa                                         <  1:597177/138‑1 (MQ=255)
                                                                                 tGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGc                                                                                     >  2:941077/1‑92 (MQ=255)
                                                                                 tGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGc                                                                                     <  1:941077/92‑1 (MQ=255)
                                                                                      cATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcac                                                                               <  2:263793/94‑1 (MQ=255)
                                                                                      cATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcac                                                                               >  1:263793/1‑94 (MQ=255)
                                                                                                  cgcTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCgg                                                                                      <  1:775180/75‑1 (MQ=255)
                                                                                                  cgcTATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCgg                                                                                      >  2:775180/1‑75 (MQ=255)
                                                                                                     tATCAGGAACAGAGTGCTATTGGTCAGGCATAATTGCTGGGGAATGACCTCACCGCGGGGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACg                   <  1:748140/139‑1 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACaa                                                                 <  2:379640/81‑1 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACaa                                                                 >  1:379640/1‑81 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTtttgcttt       >  1:833916/1‑139 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTtttgcttt       >  1:618641/1‑139 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTtttgcttt       >  2:20919/1‑139 (MQ=255)
                                                                                                                 agTGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTtttgcttt       >  2:346643/1‑139 (MQ=255)
                                                                                                                   tGCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTtttgctttgc     >  2:603788/1‑139 (MQ=255)
                                                                                                                    gCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCg    <  1:886333/139‑1 (MQ=255)
                                                                                                                    gCTATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCg    <  2:618641/139‑1 (MQ=255)
                                                                                                                      tATTGGTCAGGCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGaa  <  1:346643/139‑1 (MQ=255)
                                                                                                                                gCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGc                                                                                     >  2:257540/1‑46 (MQ=255)
                                                                                                                                gCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGc                                                                                     <  1:257540/46‑1 (MQ=255)
                                                                                                                                gCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcaca                                                                              >  2:578532/1‑53 (MQ=255)
                                                                                                                                gCATAATTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGcaca                                                                              <  1:578532/53‑1 (MQ=255)
                                                                                                                                     |                                                                                                                           
CGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGTGCTATTGGTCAGGCATAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGGACAATTTCGTAATACAGAAAGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAA  >  NC_000913/2210811‑2211067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: