| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,567,249 | C→T | intergenic (‑3/+38) | yjiN ← / ← mdtM | zinc‑type alcohol dehydrogenase‑like protein/multidrug efflux system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,567,249 | 0 | C | T | 96.0% | 70.7 / ‑3.8 | 25 | intergenic (‑3/+38) | yjiN/mdtM | zinc‑type alcohol dehydrogenase‑like protein/multidrug efflux system protein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (11/13); total (11/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.17e-01 | |||||||||||
CAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCAC > NC_000913/4567114‑4567376 | cAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGtt < 2:688784/139‑1 (MQ=255) aGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTa < 1:112356/139‑1 (MQ=255) cACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCt < 2:755060/139‑1 (MQ=255) ggcggcAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGtt < 1:174189/104‑1 (MQ=255) ggcggcAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGtt > 2:174189/1‑104 (MQ=255) aaaCAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGctc < 1:207893/139‑1 (MQ=255) cGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCt > 1:471439/1‑139 (MQ=255) cAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCgg < 2:471439/139‑1 (MQ=255) gcagcGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGa > 1:802763/1‑139 (MQ=255) ggcgATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTg > 1:88296/1‑139 (MQ=255) tAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCa < 2:88296/139‑1 (MQ=255) gCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCAcgc < 2:252080/139‑1 (MQ=255) agagCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCt < 1:897777/65‑1 (MQ=255) agagCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCt > 2:897777/1‑65 (MQ=255) gcgcCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCt < 2:820073/62‑1 (MQ=255) gcgcCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCt > 1:820073/1‑62 (MQ=255) gcgcCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATc > 2:687155/1‑139 (MQ=255) aCCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCa < 2:112721/139‑1 (MQ=255) ttttGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCt > 1:918020/1‑53 (MQ=255) ttttGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCt < 2:918020/53‑1 (MQ=255) tGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAg > 2:411487/1‑71 (MQ=255) tGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAg < 1:411487/71‑1 (MQ=255) tttATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCATTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCa > 2:682059/1‑90 (MQ=255) tttATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCa < 1:682059/90‑1 (MQ=255) tttATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCcac > 2:110326/1‑139 (MQ=255) | CAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACGCCCGCCAC > NC_000913/4567114‑4567376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |