| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,080,915 | (G)5→6 | intergenic (+102/‑441) | putP → / → efeU | proline:sodium symporter/ferrous iron permease (pseudogene) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,080,910 | 1 | . | G | 100.0% | 76.0 / NA | 23 | intergenic (+97/‑446) | putP/efeU | proline:sodium symporter/ferrous iron permease (pseudogene) |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (15/8); total (15/8) | |||||||||||
CTCCGCCGTCACGGTTGCAGGAAAGCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCCTCGCCATATAAATTGAATGGTGCAGGGAGCGCGCA‑GGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATAATCGCGGATGGACG > NC_000913/1080785‑1081043 | cTCCGCCGTCACGGTTGCAGGAAAGCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCCTCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGGCGGCCaa > 2:360239/1‑139 (MQ=255) gTTGCAGGAAAGCTAAGGGACTTAGCCTGCGGCGG‑TTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCCTCGCCATATAAATTGAATGGTGCAGGGAGCGCGCA‑g > 2:767117/1‑113 (MQ=255) gTTGCAGGAAAGCTAAGGGACTTAGCCTGCGGCGG‑TTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCCTCGCCATATAAATTGAATGGTGCAGGGAGCGCGCA‑g < 1:767117/113‑1 (MQ=255) gCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCCTCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCgccgccgcc > 2:965135/1‑126 (MQ=255) gCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCCTCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCgccgccgcc < 1:965135/126‑1 (MQ=255) ggACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCCTCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTc > 2:249050/1‑139 (MQ=255) ccTCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGCCCCctg > 2:1021793/1‑66 (MQ=255) ccTCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGCCCCctg < 1:1021793/66‑1 (MQ=255) tCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCg < 2:932200/116‑1 (MQ=255) tCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCg > 1:932200/1‑116 (MQ=255) gCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGcccc < 2:695802/59‑1 (MQ=25) gCCATATAAATTGAATGATGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGcccc > 1:695802/1‑59 (MQ=21) aTGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGccacc < 2:1072675/92‑1 (MQ=255) aTGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGccacc > 1:1072675/1‑92 (MQ=255) aTGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAg > 1:787701/1‑127 (MQ=255) aTGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAg < 2:787701/127‑1 (MQ=255) tGGTGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATaa > 2:738638/1‑139 (MQ=255) tGCAGGGAGCGCGCAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATAATcg > 1:836211/1‑139 (MQ=255) cgcgcAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTg < 2:277506/92‑1 (MQ=255) cgcgcAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTg > 1:277506/1‑92 (MQ=255) cgcgcAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATAATCGCGGATGGAc > 2:536609/1‑139 (MQ=255) gcgcAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGa > 2:360578/1‑71 (MQ=255) gcgcAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGa < 1:360578/71‑1 (MQ=255) gcgcAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATAATCGCGGATGGACg > 2:299060/1‑139 (MQ=255) gcgcAGGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATAATCGCGGATGGACg > 1:472804/1‑139 (MQ=255) | CTCCGCCGTCACGGTTGCAGGAAAGCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCCTCGCCATATAAATTGAATGGTGCAGGGAGCGCGCA‑GGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATAATCGCGGATGGACG > NC_000913/1080785‑1081043 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |