| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,189,853 | (T)7→8 | coding (595/672 nt) | phoP ← | response regulator in two‑component regulatory system with PhoQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,189,846 | 1 | . | T | 100.0% | 142.1 / NA | 44 | I201N (ATT→AAT) | phoP | response regulator in two‑component regulatory system with PhoQ |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (18/26); total (18/26) | |||||||||||
TGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAA‑TTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAA > NC_000913/1189711‑1189978 | tGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAA‑ttt > 2:989973/1‑139 (MQ=255) gCCGTTGCCAACAGAAAACGTACCCGCAGAGAGAGCGGGAAAAAATGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAA‑tttt > 2:641674/1‑139 (MQ=255) aGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTTTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGAc < 1:641674/139‑1 (MQ=255) aaCGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTcc < 2:708192/139‑1 (MQ=255) gTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCAt < 1:461114/139‑1 (MQ=255) gTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCAt < 1:618562/139‑1 (MQ=255) gCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATc < 1:650310/139‑1 (MQ=255) gggAAAAAAAGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCTCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTAt < 1:625352/139‑1 (MQ=255) tcatcaGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCgg > 1:890450/1‑139 (MQ=255) aTTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGa < 1:288099/139‑1 (MQ=255) gATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCAt > 1:9817/1‑77 (MQ=255) gATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCAt < 2:9817/77‑1 (MQ=255) tAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGa < 1:361183/67‑1 (MQ=255) tAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGa > 2:361183/1‑67 (MQ=255) ggCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGa > 1:1019449/1‑111 (MQ=255) ggCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGa < 2:1019449/111‑1 (MQ=255) ggCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGc > 1:140064/1‑139 (MQ=255) ccGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCg < 1:600555/93‑1 (MQ=255) ccGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCg > 2:600555/1‑93 (MQ=255) gAACGGTGGTAATCACTTCTTGGGGATATTTTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCAtt < 2:820912/120‑1 (MQ=255) gAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCAtt > 1:820912/1‑120 (MQ=255) cGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACtt < 2:140064/139‑1 (MQ=255) tggtAATCACTTCTTGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGc > 2:1101034/1‑139 (MQ=255) ttcttGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCg < 2:62087/73‑1 (MQ=255) ttcttGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCg > 1:62087/1‑73 (MQ=255) ttcttGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGa > 2:531151/1‑89 (MQ=255) ttcttGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGa < 1:531151/89‑1 (MQ=255) ttcttGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCg > 2:924666/1‑139 (MQ=255) ttcttGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCg > 1:28546/1‑139 (MQ=255) cttGGGGATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTa > 2:716407/1‑139 (MQ=255) ggATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAAc < 1:989973/139‑1 (MQ=255) ggATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAAc < 2:28546/139‑1 (MQ=255) ggATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAAc < 2:890450/139‑1 (MQ=255) ggATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAAc < 1:470071/139‑1 (MQ=255) ggATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGGTGGAGCATTGACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAAc < 2:685744/139‑1 (MQ=255) gATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATc < 2:323964/39‑1 (MQ=37) gATATTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATc > 1:323964/1‑39 (MQ=37) atatTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGt < 1:564371/139‑1 (MQ=255) tatTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTg < 1:953746/109‑1 (MQ=255) tatTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTg > 2:953746/1‑109 (MQ=255) tatTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAAc < 1:125200/136‑1 (MQ=255) tatTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAAc > 2:125200/1‑136 (MQ=255) tatTGTGCCTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGtt > 1:340698/1‑139 (MQ=255) ccTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCg < 2:170839/64‑1 (MQ=255) ccTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCg > 1:170839/1‑64 (MQ=255) ccTGAATTTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCataa < 1:1101034/139‑1 (MQ=255) | TGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAGCGCAATTCGAACAGATAGCCCTGGCCGCGAACGGTGGTAATCACTTCTTGGGGATATTGTGCCTGAA‑TTTTTTTGCGCAGACGTCCCATCAGTACATCAATGGTATGGCTTTCCCGCAGCTCCGCATCCGGATAGAGTTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAA > NC_000913/1189711‑1189978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |