Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 883,665 IS1 (–) +9 bp [mdfA] [mdfA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258675NA (NA)58 (1.220) 40/216 0.1 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 883665 = 0 (0.000)intergenic (‑277/‑8) ybjG/mdfA undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein
* ? NC_000913 = 8836730 (0.000)46 (0.960) 35/216 0.3 100% coding (1/1233 nt) mdfA multidrug efflux system protein
?NC_000913 = 1050545 NA (NA)noncoding (768/768 nt) IS1 repeat region

Only 100 of 109 total aligned reads displayed.

GGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCG  >  NC_000913/883529‑883799
                                                                                                                                        |                                                                                                                                      
ggTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCgaagaa                                                                                                                                      <  2:403680/139‑1 (MQ=255)
atgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGaa                                                                                                                                      >  1:217079‑M2/137‑139 (MQ=255)
     aataaaACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCATCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATtgc                                                                                                                                 >  1:50602/1‑139 (MQ=255)
          gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatggaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcataacgGAAATagcataca                                                                                                                            >  2:735623‑M2/127‑139 (MQ=255)
          gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATtgcatgca                                                                                                                            <  1:1058442‑M2/13‑1 (MQ=255)
          gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATtgcatgca                                                                                                                            >  2:906494‑M2/127‑139 (MQ=255)
          gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATtgcatgca                                                                                                                            >  2:1058442‑M2/127‑139 (MQ=255)
          aaCTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCTCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggta                                                                                                                            <  2:392461‑M1/139‑5 (MQ=255)
          aaCTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggta                                                                                                                            <  2:694586‑M1/139‑5 (MQ=255)
            cTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaat                                                                                                                          >  1:36077‑M1/1‑133 (MQ=255)
                  gaaagCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactcc                                                                                                                    <  2:220041‑M1/139‑13 (MQ=255)
                  gaaagCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactcc                                                                                                                    <  2:36077‑M1/139‑13 (MQ=255)
                    aagCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaa                                                                                                                  <  2:388914‑M1/139‑15 (MQ=255)
                     gttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATtgcatg                                                                                                                              >  2:262434‑M2/116‑126 (MQ=255)
                     gttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATtgcatg                                                                                                                              <  1:262434‑M2/11‑1 (MQ=255)
                      gCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAACTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaact                                                                                                                <  1:737490‑M1/139‑17 (MQ=255)
                             tataCTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgat                                                                                                         <  2:45116‑M1/139‑24 (MQ=255)
                             tataCTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgat                                                                                                         <  2:203218‑M1/139‑24 (MQ=255)
                               accccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGc                                                                                                       <  2:217079‑M2/34‑1 (MQ=255)
                                ccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTg                                                                                                        >  2:1048195‑M2/105‑137 (MQ=255)
                                ccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTg                                                                                                        <  1:1048195‑M2/33‑1 (MQ=255)
                                         aatGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgt                                                                                             >  1:803234‑M1/1‑104 (MQ=255)
                                           tGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttc                                                                                           >  2:589281‑M1/1‑102 (MQ=255)
                                           tGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgat                                                                                                         >  1:345012‑M1/1‑102 (MQ=255)
                                           tGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgat                                                                                                         <  2:345012‑M1/125‑24 (MQ=255)
                                               aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAg                                                                                                                 <  1:402876‑M2/24‑1 (MQ=255)
                                               aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAg                                                                                                                 >  2:402876‑M2/90‑113 (MQ=255)
                                               aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAg                                                                                       >  1:355692‑M2/90‑139 (MQ=255)
                                               aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAg                                                                                       >  1:181678‑M2/90‑139 (MQ=255)
                                                gAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATtgca                                                                                                                                <  2:610676/97‑1 (MQ=255)
                                                gAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATtgca                                                                                                                                >  1:610676/1‑97 (MQ=255)
                                                   tgtgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGTAggtaatgactccaacttattgatagt                                                                                                      >  1:1045563‑M1/1‑94 (MQ=255)
                                                   tgtgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGTAggtaatgactccaacttattgatagt                                                                                                      <  2:1045563‑M1/120‑27 (MQ=255)
                                                   tgtgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggt                                                                                                                             >  2:897786‑M1/1‑94 (MQ=255)
                                                   tgtgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggt                                                                                                                             <  1:897786‑M1/97‑4 (MQ=255)
                                                   ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATtgcatgca                                                                                                                            >  2:700395‑M2/86‑98 (MQ=255)
                                                    gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGtt                                                                                  >  2:136655‑M2/85‑139 (MQ=255)
                                                     tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattga                                                                                                          <  2:116145‑M1/114‑23 (MQ=255)
                                                     tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattga                                                                                                          >  1:116145‑M1/1‑92 (MQ=255)
                                                      gggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTAc                                                                                >  1:159823‑M2/83‑139 (MQ=255)
                                                       ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTg                                                                                               >  1:109051‑M2/82‑123 (MQ=255)
                                                       ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTg                                                                                               <  2:109051‑M2/42‑1 (MQ=255)
                                                         acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACttt                                                                             >  1:1069635‑M2/80‑139 (MQ=255)
                                                         acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACttt                                                                             >  2:887889‑M2/80‑139 (MQ=255)
                                                           agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTc                                                                           <  1:31588‑M2/62‑1 (MQ=255)
                                                              tgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACtttt                                                                            <  1:882218‑M2/61‑1 (MQ=255)
                                                              tgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACtttt                                                                            >  2:882218‑M2/75‑135 (MQ=255)
                                                              gTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactc                                                                                                                     >  2:503908‑M1/1‑83 (MQ=255)
                                                              gTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactc                                                                                                                     <  1:503908‑M1/94‑12 (MQ=255)
                                                               tGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                       >  2:599422‑M1/1‑82 (MQ=255)
                                                               tGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                       >  2:460470‑M1/1‑82 (MQ=255)
                                                                atagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCctct                                                                      <  1:136655‑M2/67‑1 (MQ=255)
                                                                                  ggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGa                                                    <  1:864926‑M2/85‑1 (MQ=255)
                                                                                    agcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCATCTCTGTCTGGTGCTTTACGAAt                                                  >  2:466810‑M2/53‑139 (MQ=255)
                                                                                       acctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAAtttt                                               <  1:227838‑M2/90‑1 (MQ=255)
                                                                                       acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccg                                                                                                                                        >  2:161458‑M2/50‑50 (MQ=255)
                                                                                       acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccg                                                                                                                                        <  1:161458‑M2/1‑1 (MQ=255)
                                                                                        ctcGTTAGCTGCGCTTTTATTAAACTCTGCGCGATCATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgag                                              <  1:671146‑M1/139‑83 (MQ=255)
                                                                                         ctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTTCGGTGCCAGGCTTGGACGTCAGGCGTTACtttt                                                                            >  2:389493‑M2/48‑108 (MQ=255)
                                                                                         ctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTTCGGTGCCAGGCTTGGACGTCAGGCGTTACtttt                                                                            <  1:389493‑M2/61‑1 (MQ=255)
                                                                                              aaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAACATAAATTAGCTTCCTGTGACAGGCTTGGACGTCAGACGGTACTTTGCCCTCTCTGTCTCGTGCTTTACGAATTTTCCACAta                                        >  2:282340‑M2/43‑139 (MQ=255)
                                                                                                cTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacag                                      <  2:803234‑M1/139‑91 (MQ=255)
                                                                                                 tGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAAtt                                                                                                                                   >  2:900444/1‑45 (MQ=255)
                                                                                                 tGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAAtt                                                                                                                                   <  1:900444/45‑1 (MQ=255)
                                                                                                   cgcTTTTATTAAACTCCGCGCGATTATTATTGGCGAAGAGATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcga                                   >  1:220490‑M1/1‑46 (MQ=255)
                                                                                                   ccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCg                                   >  2:405850‑M2/38‑139 (MQ=255)
                                                                                                      tcatacattaaatcagtgagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCctc                                                                       <  2:234634‑M2/66‑1 (MQ=255)
                                                                                                      tcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCctc                                                                       >  1:234634‑M2/35‑100 (MQ=255)
                                                                                                           ttaAACTCTGCGCGATTATTATTGTCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcggataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtc                           <  2:220490‑M1/139‑102 (MQ=255)
                                                                                                                ctctGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccca                        <  2:265339‑M1/137‑105 (MQ=255)
                                                                                                                ctctGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccca                        >  1:265339‑M1/1‑33 (MQ=255)
                                                                                                                aatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTg                                                                                               <  1:428388‑M2/42‑1 (MQ=255)
                                                                                                                aatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTg                                                                                               >  2:428388‑M2/25‑66 (MQ=255)
                                                                                                                aatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGAt                      >  1:194997‑M2/25‑139 (MQ=255)
                                                                                                                 atcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTc                                                                           >  1:145273‑M2/24‑85 (MQ=255)
                                                                                                                 atcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTc                                                                           <  2:145273‑M2/62‑1 (MQ=255)
                                                                                                                 atcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTc                                                                           <  2:195063‑M2/62‑1 (MQ=255)
                                                                                                                 atcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGAtt                     <  2:159823‑M2/116‑1 (MQ=255)
                                                                                                                  tcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTAC‑‑TTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCaa                  <  1:258714‑M2/117‑1 (MQ=255)
                                                                                                                  ctGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccg                    >  2:832368‑M1/1‑31 (MQ=255)
                                                                                                                   tGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt                   >  2:795176‑M1/1‑30 (MQ=255)
                                                                                                                   tGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactcc                                                                                                                    >  2:431787‑M1/1‑30 (MQ=255)
                                                                                                                   tGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactcc                                                                                                                    <  1:431787‑M1/42‑13 (MQ=255)
                                                                                                                    agtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCaa                  <  1:887889‑M2/119‑1 (MQ=255)
                                                                                                                     gtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAAc                 <  1:405850‑M2/120‑1 (MQ=255)
                                                                                                                     cgcgATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                            <  2:831226‑M1/128‑101 (MQ=255)
                                                                                                                     cgcgATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                            >  1:831226‑M1/1‑28 (MQ=255)
                                                                                                                      taagttggcagcatcaccGAAATTGCATGCAAAATAAATTAg                                                                                                                 >  2:823004‑M2/19‑42 (MQ=255)
                                                                                                                      taagttggcagcatcaccGAAATTGCATGCAAAATAAATTAg                                                                                                                 <  1:823004‑M2/24‑1 (MQ=255)
                                                                                                                        agttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCg              >  2:142613‑M2/17‑139 (MQ=255)
                                                                                                                           tggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAAcc                                          >  1:793802‑M2/14‑108 (MQ=255)
                                                                                                                              cagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCa                   >  2:564032‑M2/11‑128 (MQ=255)
                                                                                                                              cagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCa                   <  1:564032‑M2/118‑1 (MQ=255)
                                                                                                                                    cGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcag  >  2:579368‑M1/1‑13 (MQ=255)
                                                                                                                                      aagaaATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc                                                                >  2:729160‑M1/1‑11 (MQ=255)
                                                                                                                                      aagaaATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc                                                                <  1:729160‑M1/75‑65 (MQ=255)
                                                                                                                                       agaaATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                       <  1:930863‑M1/99‑90 (MQ=255)
                                                                                                                                       agaaATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                       >  2:930863‑M1/1‑10 (MQ=255)
                                                                                                                                        gaaATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcc      <  2:488558‑M1/131‑123 (MQ=255)
                                                                                                                                        gaaATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcc      >  1:488558‑M1/1‑9 (MQ=255)
                                                                                                                                        |                                                                                                                                      
GGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCG  >  NC_000913/883529‑883799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.