Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,757,753 Δ5 bp coding (969‑973/1005 nt) ldtE ← murein L,D‑transpeptidase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1757753 1757757 5 39 [0] [0] 40 ldtE murein L,D‑transpeptidase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 17577520 (0.000)38 (0.800) 30/214 0.4 100% coding (974/1005 nt) ldtE murein L,D‑transpeptidase
?NC_000913 1757758 = 0 (0.000)coding (968/1005 nt) ldtE murein L,D‑transpeptidase

GACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCTTTAA  >  NC_000913/1757628‑1757896
                                                                                                                                  |                                                                                                                                          
gtctggacaacatggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTc                                                                                                                                    >  1:546395‑M2/131‑139 (MQ=255)
                    aaataccgcaagtaatggtacctgtgaagtgaaaaatggcgcacattgtgcgccgttttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattctcttgctTCACCATTCTGCGCTGACTCTACTGAAgg                                                                                                                >  1:277167‑M2/111‑139 (MQ=255)
                            caagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgc                                                                                                        >  1:322116‑M2/103‑139 (MQ=255)
                            caagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgc                                                                                                        >  2:1049879‑M2/103‑139 (MQ=255)
                                       acctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTgc                                                                                                                                 >  1:822499‑M2/92‑103 (MQ=255)
                                       acctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTgc                                                                                                                                 <  2:822499‑M2/12‑1 (MQ=255)
                                        cctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCACTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAg                                                                                            >  2:691243‑M2/91‑139 (MQ=255)
                                           gtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTg                                                                                         >  2:162167‑M2/88‑139 (MQ=255)
                                                   aaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTg                                                                                 >  2:412105‑M2/80‑139 (MQ=255)
                                                          gcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCCGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCg                                                                          <  1:956368‑M2/67‑1 (MQ=255)
                                                                    tgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCt                                                                                                                              >  1:866063‑M2/63‑77 (MQ=255)
                                                                    tgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCt                                                                                                                              <  2:866063‑M2/15‑1 (MQ=255)
                                                                    tgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATa                                                                >  1:498455‑M2/63‑139 (MQ=255)
                                                                         cattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCAATGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTg                                                           <  1:691243‑M2/82‑1 (MQ=255)
                                                                              tttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgct                                                                                                       <  1:452867‑M2/38‑1 (MQ=255)
                                                                              tttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgct                                                                                                       >  2:452867‑M2/53‑90 (MQ=255)
                                                                              tttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCcga                                                      <  1:162167‑M2/87‑1 (MQ=255)
                                                                                                  ttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGAc                                  >  1:370189‑M2/33‑139 (MQ=255)
                                                                                                  ttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGAc                                  >  2:386982‑M2/33‑139 (MQ=255)
                                                                                                   tactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACt                                 <  1:651645‑M2/108‑1 (MQ=255)
                                                                                                     ctgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAACCCGGATACCCTGCCcga                                                      >  1:441250‑M2/30‑116 (MQ=255)
                                                                                                     ctgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCcga                                                      <  2:441250‑M2/87‑1 (MQ=255)
                                                                                                      tgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAAc                              <  2:498455‑M2/111‑1 (MQ=255)
                                                                                                             cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGAt                       >  2:558260‑M2/22‑139 (MQ=255)
                                                                                                                  aacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACa                  <  1:386982‑M2/123‑1 (MQ=255)
                                                                                                                  aacatattcccttgctGTACCCTTCTGAGCTGAATCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCGCCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACa                  <  2:277167‑M2/123‑1 (MQ=255)
                                                                                                                       attcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATc                      >  2:900665‑M2/12‑130 (MQ=255)
                                                                                                                       attcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATc                      <  1:900665‑M2/119‑1 (MQ=255)
                                                                                                                         tcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTAt           <  2:370189‑M2/130‑1 (MQ=255)
                                                                                                                         tcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTAt           <  2:322116‑M2/130‑1 (MQ=255)
                                                                                                                            cttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGccc                                                        >  2:802014‑M2/7‑91 (MQ=255)
                                                                                                                            cttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGccc                                                        <  1:802014‑M2/85‑1 (MQ=255)
                                                                                                                             ttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTc       >  2:739976‑M2/6‑139 (MQ=255)
                                                                                                                              tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCt      <  2:408841‑M2/135‑1 (MQ=255)
                                                                                                                              tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGAGACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCt      >  2:674376‑M2/5‑139 (MQ=255)
                                                                                                                                ctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTg                                                                                                         >  2:266765‑M2/3‑38 (MQ=255)
                                                                                                                                ctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTg                                                                                                         <  1:266765‑M2/36‑1 (MQ=255)
                                                                                                                                ctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCttt    >  1:36926‑M2/3‑139 (MQ=255)
                                                                                                                                 tTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCTTTa   >  1:587341‑M2/2‑139 (MQ=255)
                                                                                                                                  tCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCTTTaa  >  1:14506/1‑139 (MQ=255)
                                                                                                                                  |                                                                                                                                          
GACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCTTTAA  >  NC_000913/1757628‑1757896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: