| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,995,231 | (A)7→8 | intergenic (‑139/+83) | ygeK ← / ← ygeN | pseudogene, response regulator family, part of T3SS PAI ETT2 remnant, putative 2‑component transcriptional regulator/pseudogene, orgB family, part of T3SS PAI ETT2 remnant |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,995,224 | 1 | . | A | 87.5% | 41.3 / ‑0.2 | 16 | intergenic (‑132/+90) | ygeK/ygeN | pseudogene, response regulator family, part of T3SS PAI ETT2 remnant, putative 2‑component transcriptional regulator/pseudogene, orgB family, part of T3SS PAI ETT2 remnant |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base A (8/6); total (9/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGTGTAAATGCTTTAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGT‑AAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGG > NC_000913/2995104‑2995329 | gAGTGTAAATGCTTTAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGc > 2:414125/1‑139 (MQ=255)gAGTGTAAATGCTTTAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGc > 2:723692/1‑139 (MQ=255) aaaaTGTTTTAACGCATTAATTAATATCAATCCTTTCAATAATAATAAAAAGCAAAATCCAAAAATAACTTTGA‑GAAATTAAAAAGAAAAATAATTAAAAAATAAAATTTTTCGGA‑AAAAAAATACCACAGGCATTaaa < 2:797418/138‑1 (MQ=255) aaaTTCTTTAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTaaa < 2:413802/139‑1 (MQ=255) aaTGCTTTAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTaaaa > 1:292008/1‑139 (MQ=255) ttAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTAAAAAATCAt > 1:898288/1‑139 (MQ=255) ttAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGT‑AAAAAAATAACAAAAGCAATaaaaaaataat > 1:797418/1‑134 (MQ=255) aCGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTAAAAAATCATgag < 1:414125/139‑1 (MQ=255) cattTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTa < 1:723692/139‑1 (MQ=255) atcatcCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTa < 1:364857/139‑1 (MQ=255) atcCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACaa < 1:1188708/139‑1 (MQ=255) ttattatAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTc > 1:1197084/1‑139 (MQ=255) ataAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAAta > 1:1146728/1‑138 (MQ=255) ataAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATc > 1:1462668/1‑139 (MQ=255) aaaGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGc > 2:789143/1‑139 (MQ=255) aatGAAATATAATT‑AAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGTTATAAGTCCTCAggg < 1:789143/139‑1 (MQ=255) | GAGTGTAAATGCTTTAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATT‑AAAAATAAAATTTTTGCGT‑AAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGG > NC_000913/2995104‑2995329 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |