Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 1,244,167 | C→T | A121T (GCC→ACC) | ycgR ← | flagellar velocity braking protein, c‑di‑GMP‑regulated |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,244,167 | 0 | C | T | 100.0% | 194.8 / NA | 60 | A121T (GCC→ACC) | ycgR | flagellar velocity braking protein, c‑di‑GMP‑regulated |
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (26/34); total (26/34) |
CTTGTAATTCGGCAGGCTTTGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTT > NC_000913/1244035‑1244268 | cttGTAATTCGGCAGGCTTTGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGga > 1:864136/1‑136 (MQ=255) cttGTAATTCGGCAGGCTCTGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGga < 2:864136/136‑1 (MQ=255) cAGGCTTTGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCg < 2:679033/139‑1 (MQ=255) aGGCTTTGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCgg < 1:626952/139‑1 (MQ=255) gCTTTGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGcg > 1:192740/1‑139 (MQ=255) ttGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGcgtcg < 2:692551/139‑1 (MQ=255) ttGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGcgtcg < 1:146336/139‑1 (MQ=255) cTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTg < 2:434189/139‑1 (MQ=255) gTAATGCGCCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCa < 2:648274/139‑1 (MQ=255) cgcCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACa < 1:517838/128‑1 (MQ=255) cgcCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACa > 2:517838/1‑128 (MQ=255) cgcCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGt > 2:263263/1‑139 (MQ=255) ccTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGcggta > 2:1353828/1‑139 (MQ=255) cTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGcggtac < 1:263263/139‑1 (MQ=255) aaTCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGgaga > 1:1300494/1‑81 (MQ=255) aaTCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGgaga < 2:1300494/81‑1 (MQ=255) aTCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTg < 2:153734/118‑1 (MQ=255) aTCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTg > 1:153734/1‑118 (MQ=255) tACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCg < 1:975873/139‑1 (MQ=255) ggCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCAt > 1:1021067/1‑104 (MQ=255) ggCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCAt < 2:1021067/104‑1 (MQ=255) gCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGc < 2:192740/139‑1 (MQ=255) cGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGcggta > 1:1474189/1‑118 (MQ=255) cGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGcggta < 2:1474189/118‑1 (MQ=255) ggAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTg < 2:653672/139‑1 (MQ=255) ggAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTg < 2:400297/139‑1 (MQ=255) ggAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTg < 1:1353828/139‑1 (MQ=255) aacgtaCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTa > 2:265494/1‑85 (MQ=255) aacgtaCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTa < 1:265494/85‑1 (MQ=255) aacgtaCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTAtt > 2:1307337/1‑139 (MQ=255) taCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGcgg > 1:753160/1‑103 (MQ=255) taCTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGcgg < 2:753160/103‑1 (MQ=255) tGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCg > 1:1323290/1‑67 (MQ=255) tGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCg < 2:1323290/67‑1 (MQ=255) tGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGcgtcg < 1:709017/73‑1 (MQ=255) tGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGcgtcg > 2:709017/1‑73 (MQ=255) gTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACa < 1:1060178/79‑1 (MQ=255) gTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACa > 2:1060178/1‑79 (MQ=255) gTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGtaataa > 1:214198/1‑110 (MQ=255) gTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGtaataa < 2:214198/110‑1 (MQ=255) tCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTa > 1:1346380/1‑139 (MQ=255) cGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGcggta < 2:433387/95‑1 (MQ=255) cGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGcggta > 1:433387/1‑95 (MQ=255) cGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGa < 1:250277/112‑1 (MQ=255) cGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGa > 2:250277/1‑112 (MQ=255) aGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAgttgtt < 2:1346380/139‑1 (MQ=255) tCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTAt < 2:391917/113‑1 (MQ=255) tCTGGCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTAt > 1:391917/1‑113 (MQ=255) gCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCAc < 1:1155230/113‑1 (MQ=255) gCAAAAATAAGGCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCAc > 2:1155230/1‑113 (MQ=255) ggtggATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCa < 2:35870/91‑1 (MQ=255) ggtggATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCa > 1:35870/4‑94 (MQ=255) ggCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGa > 1:1294858/1‑63 (MQ=255) ggCGGATGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGa < 2:1294858/63‑1 (MQ=255) aTGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTAc < 2:532572/42‑1 (MQ=255) aTGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTAc > 1:532572/1‑42 (MQ=255) tGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGa < 2:1092214/81‑1 (MQ=255) tGGAGTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGa > 1:1092214/1‑81 (MQ=255) gTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGc > 1:338977/1‑83 (MQ=255) gTGGGGTGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGc < 2:338977/83‑1 (MQ=255) | CTTGTAATTCGGCAGGCTTTGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATCGGCGTCGTTGTACAAACCATAAGGTGGGAGGCGGTACGGTAATAAATGCCGGAAGCTGCAAGTATTCACTCTGCTGTAGTTGTT > NC_000913/1244035‑1244268 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |