| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,770,987 | T→C | C103R (TGT→CGT) | yfjS → | CP4‑57 prophage, uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,770,987 | 0 | T | C | 100.0% | 254.0 / NA | 70 | C103R (TGT→CGT) | yfjS | CP4‑57 prophage, uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (34/36); total (34/36) | |||||||||||
CAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTTGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGG > NC_000913/2770852‑2771118 | caGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTa < 2:838428/139‑1 (MQ=255) ggTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTAtt > 1:1424313/1‑139 (MQ=255) ggCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTGCTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCg > 1:1052022/1‑139 (MQ=255) gCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGa > 2:761510/1‑139 (MQ=255) gCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGa < 1:589065/139‑1 (MQ=255) tcATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAata < 1:1357130/139‑1 (MQ=255) tGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGaa < 1:919545/134‑1 (MQ=255) tGCAGGTCTTACGTACCAGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGaa > 2:919545/1‑134 (MQ=255) cAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACg > 1:569156/1‑139 (MQ=255) aGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa < 1:273702/139‑1 (MQ=255) tCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGt > 1:974759/1‑139 (MQ=255) cTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGtt > 2:1082922/1‑139 (MQ=255) aCGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACg < 2:6054/139‑1 (MQ=255) aCGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACg < 2:1424313/139‑1 (MQ=255) aCGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACg < 2:721759/139‑1 (MQ=255) tACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGAc < 1:546407/139‑1 (MQ=255) cccGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa > 1:976127/1‑127 (MQ=255) cccGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGAccc > 2:746956/1‑139 (MQ=255) cccGTGAGTCGCCCGATGGTCGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa < 2:976127/127‑1 (MQ=255) ccGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCg < 1:746956/139‑1 (MQ=255) tGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGtat > 2:123204/1‑139 (MQ=255) gAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGtata < 1:1082922/139‑1 (MQ=255) gCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACgaaa > 2:898061/1‑139 (MQ=255) tGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGaaaaa > 1:4540/1‑139 (MQ=255) tGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACt > 2:1414104/1‑139 (MQ=255) gCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACtt < 1:761510/139‑1 (MQ=255) ggTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa < 1:333807/101‑1 (MQ=255) ggTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa > 2:333807/1‑101 (MQ=255) tactacTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATg < 1:898061/139‑1 (MQ=255) actactATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGa > 1:572611/1‑139 (MQ=255) ctaTCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGc < 2:572611/139‑1 (MQ=255) tGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGaaaaa > 2:225970/1‑110 (MQ=255) tGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGaaaaa < 1:225970/110‑1 (MQ=255) ggTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTg > 2:622702/1‑139 (MQ=255) ggTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTg > 2:1423496/1‑139 (MQ=255) tAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTAtt > 1:957520/1‑50 (MQ=255) tAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTAtt < 2:957520/50‑1 (MQ=255) tAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCa < 1:197944/132‑1 (MQ=255) tAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCa > 2:197944/1‑132 (MQ=255) atatGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATggg > 2:743471/1‑139 (MQ=255) tatGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGa < 1:622702/139‑1 (MQ=255) tatGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGa < 1:1423496/139‑1 (MQ=255) atGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa > 1:213290/1‑74 (MQ=255) atGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa < 2:213290/74‑1 (MQ=255) tGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACg < 2:1052022/139‑1 (MQ=255) ggaggaGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGAc < 1:822886/82‑1 (MQ=255) ggaggaGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGAc > 2:822886/1‑82 (MQ=255) aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGa < 1:1023395/46‑1 (MQ=255) aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGa > 2:1023395/1‑46 (MQ=255) aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACg < 1:517063/120‑1 (MQ=255) aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACg > 2:517063/1‑120 (MQ=255) aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCaaa > 2:404587/1‑125 (MQ=255) aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCaaa < 1:404587/125‑1 (MQ=255) aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGgct > 2:78992/1‑139 (MQ=255) gaAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTa < 2:1268159/71‑1 (MQ=255) gaAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTa > 1:1268159/1‑71 (MQ=255) aaaaCCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGATCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGa > 1:499408/1‑139 (MQ=255) aaCCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATa < 2:499408/139‑1 (MQ=255) aaCCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATa < 2:974759/139‑1 (MQ=255) cGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGa > 2:633243/1‑124 (MQ=255) cGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGa < 1:633243/124‑1 (MQ=255) gTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCG‑ATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTc < 1:1347820/139‑1 (MQ=255) tCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAatat > 2:471161/1‑40 (MQ=255) tCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAatat < 1:471161/40‑1 (MQ=39) tCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCa < 2:366162/42‑1 (MQ=255) tCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCa > 1:366162/1‑42 (MQ=255) tCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTc > 1:285162/1‑139 (MQ=255) aGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTCaaa < 2:569156/139‑1 (MQ=255) cGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTCAAAccc < 2:285162/139‑1 (MQ=255) tGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTCAAACCCTGATAACCgg > 2:1449868/1‑139 (MQ=255) | CAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTTGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGG > NC_000913/2770852‑2771118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |