Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,962,441	C→T	*108* (TAG→TAA)	ppdC ←	putative prepilin peptidase‑dependent protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,962,441	0	C	T	100.0%	220.2 / NA	68	*108* (TAG→TAA)	ppdC	putative prepilin peptidase‑dependent protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (40/28);  total (40/28)

CGGTACTTTGCACCAGAATCATCTCTGGTTCGAAAGGATCGTCCAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCTGCATTCGGTTGACCTGCCAGTTGGCAGGTGGCG  >  NC_000913/2962308‑2962574                                                                                                                                      |                                                                                                                                      cGGTACTTTGCACCAGAATCATCTCTGGTTCGAAAGGATCGTCCAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTg                                                                                                                                  >  2:958787/1‑139 (MQ=255)      cTTTGCACCAGAATCATCTCTGGTTCGAAAGGATCGTCCAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGAt                                                                                                                             <  1:958787/139‑1 (MQ=255)           cACCAGAATCATCACTGGTTCGACAGGATCGTCGAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCTGGCGATTGGAATGGTATACCCTTAACATAGCGGCTCCTGATTACTGACGATTCggg                                                                                                                        <  1:970769/139‑1 (MQ=255)                   tcatcTCTGGTTCGAAAGGATCGTCCAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAg                                                                                                                >  2:1266767/1‑139 (MQ=255)                     atcTCTGGTTCGAAAGGATCGTCCAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGc                                                                                                              <  1:497185/139‑1 (MQ=255)                           ggTTCGAAAGGATCGTCCAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCggg                                                                                                                        >  2:363428/1‑123 (MQ=255)                           ggTTCGAAAGGATCGTCCAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCggg                                                                                                                        <  1:363428/123‑1 (MQ=255)                           ggTTCGAAAGGATCGTCCAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCa                                                                                                        >  1:11601/1‑139 (MQ=255)                                 aaaGGATCGTCCAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGc                                                                                                  >  1:123817/1‑139 (MQ=255)                                               ccGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCg                                                                                    >  1:290584/1‑139 (MQ=255)                                                                 aaaCTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACg                                                                  <  2:123817/139‑1 (MQ=255)                                                                     tCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGAt                                                                                                                             <  1:486956/76‑1 (MQ=255)                                                                     tCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGAt                                                                                                                             >  2:486956/1‑76 (MQ=255)                                                                     tCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGa                                                              <  1:1266767/139‑1 (MQ=255)                                                                       cATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATg                                                            >  1:1320864/1‑139 (MQ=255)                                                                       cATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATg                                                            >  2:232715/1‑139 (MQ=255)                                                                        aTCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGa                                                                                                                                 >  1:141974/1‑69 (MQ=255)                                                                        aTCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGa                                                                                                                                 <  2:141974/69‑1 (MQ=255)                                                                               cTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGAcaca                                                    >  1:60523/1‑139 (MQ=255)                                                                                ttCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACAt                                                   <  2:60523/139‑1 (MQ=255)                                                                                        cGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTg                                           >  2:1468594/1‑139 (MQ=255)                                                                                          tCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAg                                                                                                                >  1:732738/1‑68 (MQ=255)                                                                                          tCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAg                                                                                                                <  2:732738/68‑1 (MQ=255)                                                                                          tCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCg                                         >  2:474445/1‑139 (MQ=255)                                                                                          tCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCg                                         <  1:712179/139‑1 (MQ=255)                                                                                          tCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCg                                         >  1:236509/1‑139 (MQ=255)                                                                                              gACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGG‑‑‑‑‑‑‑‑GGCGGGTCATCTCGCCTTCTCTGCCCCCggg                                                                                  <  2:1407154/86‑1 (MQ=255)                                                                                              gACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGG‑‑‑‑‑‑‑‑GGCGGGTCATCTCGCCTTCTCTGCCCCCggg                                                                                  >  1:1407154/1‑86 (MQ=255)                                                                                                   ttGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGt                                                                                 <  2:398390/90‑1 (MQ=255)                                                                                                   ttGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGt                                                                                 >  1:398390/1‑90 (MQ=255)                                                                                                   ttGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGt                                                                                 <  2:300628/90‑1 (MQ=255)                                                                                                   ttGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGt                                                                                 >  1:300628/1‑90 (MQ=255)                                                                                                   ttGGAATGGTAGACCCTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACAAATCCCGCCTGCGATGTCTGCa                                >  1:680857/1‑139 (MQ=255)                                                                                                                cccTTAACATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCTGCATTCGGTTGACCTg                   >  1:1271623/1‑139 (MQ=255)                                                                                                                     aaCATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCAtctc                                                                                                    >  2:1044791/1‑53 (MQ=255)                                                                                                                     aaCATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCAtctc                                                                                                    <  1:1044791/53‑1 (MQ=255)                                                                                                                     aaCATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGcccc                                                                                      <  1:82735/67‑1 (MQ=255)                                                                                                                     aaCATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGcccc                                                                                      >  2:82735/1‑67 (MQ=255)                                                                                                                     aaCATAGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCTGCATTCGGTTGACCTGCCAGt              >  2:1187271/1‑139 (MQ=255)                                                                                                                          aGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTtct                                                                                             <  1:858379/55‑1 (MQ=255)                                                                                                                          aGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTtct                                                                                             >  2:858379/1‑55 (MQ=255)                                                                                                                          aGCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCTGCATTCGATTGACCTGCCAGTTGGCa         >  2:988282/1‑139 (MQ=255)                                                                                                                           gCGGCTCCTGATTACTGACGATTCGGTCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCg                                         <  1:889445/106‑1 (MQ=255)                                                                                                                           gCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGcccc                                                                                      <  1:1118906/61‑1 (MQ=255)                                                                                                                           gCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGcccc                                                                                      >  2:1118906/1‑61 (MQ=255)                                                                                                                           gCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCggg                                                                                  <  1:397739/65‑1 (MQ=255)                                                                                                                           gCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCggg                                                                                  >  2:397739/1‑65 (MQ=255)                                                                                                                           gCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGaaa                                                                             <  2:919825/70‑1 (MQ=255)                                                                                                                           gCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGaaa                                                                             >  1:919825/1‑70 (MQ=255)                                                                                                                           gCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCt                                                                >  2:134509/1‑83 (MQ=255)                                                                                                                           gCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCt                                                                <  1:134509/83‑1 (MQ=255)                                                                                                                           gCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCg                                         >  2:889445/1‑106 (MQ=255)                                                                                                                           gCGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCTGCATTCGGTTGACCTGCCAGTTGGCAg        >  1:488753/1‑139 (MQ=255)                                                                                                                            cGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCtt                                                                                               >  1:626787/1‑51 (MQ=255)                                                                                                                            cGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCtt                                                                                               <  2:626787/51‑1 (MQ=255)                                                                                                                            cGGCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCTGCATTCGGTTGACCTGCCAGTTGGCAgg       >  2:788606/1‑139 (MQ=255)                                                                                                                             ggCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGccc                                                                                       >  2:1294829/1‑58 (MQ=255)                                                                                                                             ggCTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGccc                                                                                       <  1:1294829/58‑1 (MQ=255)                                                                                                                               cTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGcc                                                                                                 >  1:510146/1‑46 (MQ=255)                                                                                                                               cTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGcc                                                                                                 <  2:510146/46‑1 (MQ=255)                                                                                                                               cTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCt                                                          >  1:1259190/1‑85 (MQ=255)                                                                                                                               cTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCt                                                          <  2:1259190/85‑1 (MQ=255)                                                                                                                               cTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCTGCATTCGGTTGACCTTCCAGTTGGCa         >  2:1217615/1‑134 (MQ=255)                                                                                                                               cTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCTGCATTCGGTTGACCTGc                  >  1:178898/1‑125 (MQ=255)                                                                                                                               cTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCTGCATTCGGTTGACCTGc                  <  2:178898/125‑1 (MQ=255)                                                                                                                               cTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCGGCATTCGGTTGACCTGCCAGTTGGCAGGTgg    >  2:744371/1‑139 (MQ=255)                                                                                                                               cTCCTGATTACTGACGATTCGGGCAATGCAGGCGGGTCAGCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCTGCATTCGGTTGACCTGCCAGTTGGCa         <  1:1217615/134‑1 (MQ=255)                                                                                                                                 ccTGATTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCTGCATTCGGTTGACCTGCCAGTTGGCAGGTGGCg  >  2:844453/1‑139 (MQ=255)                                                                                                                                      |                                                                                                                                      CGGTACTTTGCACCAGAATCATCTCTGGTTCGAAAGGATCGTCCAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGCGATGTCTGCATTCGGTTGACCTGCCAGTTGGCAGGTGGCG  >  NC_000913/2962308‑2962574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑