| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,085,461 | A→G | S151P (TCC→CCC) | speA ← | biosynthetic arginine decarboxylase, PLP‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,085,461 | 0 | A | G | 100.0% | 249.4 / NA | 69 | S151P (TCC→CCC) | speA | biosynthetic arginine decarboxylase, PLP‑binding |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (37/32); total (37/32) | |||||||||||
CAGATAGACCTTGTGCCCCATCTTCTCGCCAATTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGAACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGCCGTTATAGCCGTAGGATTCCCTCGCACGTTTGAAC > NC_000913/3085327‑3085594 | cAGATAGACCTTGTGCCCCATCTTCTCGCCAATTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTAATGCCATCAACTCGGCTTTGGGACCg < 2:373071/139‑1 (MQ=255) ttGTGCGCCATCTTCTCGCCAATTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCTTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑c > 1:129318/1‑139 (MQ=255) ttGTGCCCCATCTTCTCGCCAATTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑c > 2:1051317/1‑139 (MQ=255) gtgCCCCATCTTCTCGCCAATTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑ccc > 2:588024/1‑139 (MQ=255) tgCCCCATCTTCTCGCCAATTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGAcc > 2:1288555/1‑125 (MQ=255) tgCCCCATCTTCTCGCCAATTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGAcc < 1:1288555/125‑1 (MQ=255) tgCCCCATCTTCTCGCCAATTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCa > 1:466625/1‑139 (MQ=255) tgCCCCATCTTCTCGCCAATTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCa > 1:1369100/1‑139 (MQ=255) aTCTTCTCGCCAATTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGtt > 1:1468456/1‑139 (MQ=255) tctcGCCAATTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGcc > 2:1039810/1‑139 (MQ=255) aaTTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCgaatga < 1:1039810/139‑1 (MQ=255) aTTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCgaatgaa < 1:582376/139‑1 (MQ=255) gCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCgaat > 2:352321/1‑130 (MQ=255) gCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCgaat < 1:352321/130‑1 (MQ=255) aGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACt < 1:588024/139‑1 (MQ=255) tatatTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCAc > 2:339247/1‑139 (MQ=255) ttCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGAGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACgcgg < 1:339247/139‑1 (MQ=255) tCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACgcggc > 2:1026871/1‑139 (MQ=255) gcgGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGcggcgg < 1:678624/139‑1 (MQ=255) ggTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCCTCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTg < 1:1051317/139‑1 (MQ=255) ggTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTg < 1:1026871/139‑1 (MQ=255) ggTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTg > 1:788248/1‑139 (MQ=255) ttGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGa < 2:58024/139‑1 (MQ=255) ttGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGa > 2:132905/1‑139 (MQ=255) ttGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGa > 2:461225/1‑139 (MQ=255) ttGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGa > 1:1431528/1‑139 (MQ=255) ttGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGa < 2:129318/139‑1 (MQ=255) tGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGAt < 1:132905/139‑1 (MQ=255) gCAGACGATGACGCTACTGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCTGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATc < 2:336670/139‑1 (MQ=255) gCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGACCCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTACTGGTTAACTTCGAt > 2:948153/1‑139 (MQ=255) gCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATc > 2:1057314/1‑139 (MQ=255) gACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATTAACTCGGCTTTGGGACCGGCTTCCAGACCCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTACTGGTTAACTTTGATCgg < 1:948153/139‑1 (MQ=255) tGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAGAc > 1:995500/1‑139 (MQ=255) tGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAAc < 2:1468456/139‑1 (MQ=255) cGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTgg < 2:449419/111‑1 (MQ=255) cGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTgg > 1:449419/1‑111 (MQ=255) cGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAAAAAGGAAGt > 2:1326279/1‑139 (MQ=255) gTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTg > 1:715822/1‑104 (MQ=255) gTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTg < 2:715822/104‑1 (MQ=255) aTGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGc > 2:118020/1‑139 (MQ=255) gCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGGTAAACAAGGAAGTAATCGCCg < 1:491180/139‑1 (MQ=255) gCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATa > 2:390383/1‑120 (MQ=255) gCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATa < 1:390383/120‑1 (MQ=255) aGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGCCGTta < 2:788248/139‑1 (MQ=255) gCATGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGCCGTtat > 1:1119865/1‑139 (MQ=255) aTGTGCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGCCGTTATAg < 1:461225/139‑1 (MQ=255) gCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCACTCACGcggcgg < 1:852201/87‑1 (MQ=255) gCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGcggcgg > 2:852201/1‑87 (MQ=255) gCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTg > 2:1381038/1‑89 (MQ=255) gCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTg < 1:1381038/89‑1 (MQ=255) gCCAGTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGCCGTTATAGCCGt > 2:1060096/1‑139 (MQ=255) gTACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGCCGTTATAGCCGTAGGa > 1:334431/1‑139 (MQ=255) tACTGCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGCCGTTATAGCCGTAGGAt > 1:965984/1‑139 (MQ=255) gCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATa > 2:308152/1‑101 (MQ=255) gCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATa < 1:308152/101‑1 (MQ=255) gCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGCCGTTATAGCCGTAGGATTccc > 2:1320472/1‑139 (MQ=255) gCCATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGCCGTTATAGCCGTAGGATTccc > 1:1130622/1‑139 (MQ=255) ccATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACgcgg > 1:474891/1‑74 (MQ=255) ccATCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACgcgg < 2:474891/74‑1 (MQ=255) aTCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCAcg > 2:221201/1‑69 (MQ=255) aTCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCAcg < 1:221201/69‑1 (MQ=255) aTCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGt > 1:689966/1‑82 (MQ=255) aTCAACTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGt < 2:689966/82‑1 (MQ=255) cTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGc < 2:1065431/38‑1 (MQ=255) cTCGGCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGc > 1:1065431/1‑38 (MQ=255) ggCTTTGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGCCGTTATAGCCGTAGGATTCCCTCGCACGTTTg < 1:192917/139‑1 (MQ=255) tttGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTg > 1:994729/1‑66 (MQ=255) tttGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTg < 2:994729/66‑1 (MQ=255) tttGGGACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGCCGTTATAGCCGTAGGATTCCCTCGCACGTTTGAAc < 1:1326279/139‑1 (MQ=255) | CAGATAGACCTTGTGCCCCATCTTCTCGCCAATTAATGCCAGGCGGATATATTCGCGGTCTTTATAACCGTTGCAGACGATGACGCTACGGGTCATGCCAGCATGTGCCAGTACTGCCATCAACTCGGCTTTGGAACCGGCTTCCAGA‑CCCAGCGGTTCGCCCGAATGAATCAGGGACTCAATCACGCGGCGGTGCTGGTTAACTTTGATCGGATAAACAAGGAAGTAATCGCCGTTATAGCCGTAGGATTCCCTCGCACGTTTGAAC > NC_000913/3085327‑3085594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |