New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1821202 | 19 (0.480) | 4 (0.110) +GGATGCAAG |
3/196 | 3.4 | 18.3% | coding (13/1359 nt) | chbC | N,N'‑diacetylchitobiose‑specific enzyme IIC component of PTS |
? | NC_000913 | = 2148961 | 20 (0.500) | coding (1288/1353 nt) | yegD | Hsp70 chaperone family protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
TTCAAGCGATGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1821188‑1821202 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGCAATCGGAATGC < NC_000913/2148961‑2148947 ||||||||| TTCAAGCGATGCAATGGATGCAAGCTGCAATCGGAATGC < 1:203887/39‑1 TTCAAGCGATGCAATGGATGCAAGCTGCAATCGGAATGC > 2:203887/1‑39 TTCAAGCGATGCAATGGATGCAAGCTGCAATCGGAATG < 1:924800/38‑1 TTCAAGCGATGCAATGGATGCAAGCTGCAATCGGAATG > 2:924800/1‑38 ||||||||| TTCAAGCGATGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1821188‑1821202 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGCAATCGGAATGC < NC_000913/2148961‑2148947 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |