| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,673,117 | C→T | W11* (TGG→TGA) | mdtI ← | multidrug efflux system transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,673,117 | 0 | C | T | 100.0% | 31.1 / NA | 12 | W11* (TGG→TGA) | mdtI | multidrug efflux system transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (4/8); total (4/8) | |||||||||||
ACGGCTTGAGAAAGCGCACTAAAGGCAGCCAGCACCGCCGCCAGGGAGAGCAAGCCAAATATTTTGCGACGAAAGCCGTCAGAAAATTTCAAAAAGACGTTAGCAACGATTTCCAGCACGATTGCCAATGCCAGCCAGGCGGCGTGAACCCATTCAAACTGCGCCATGGTTCACCTCCAGTTCAGGTTTACGCGCTTTACGGGTACCTGATTTTATCAACACAATCCCGGCGACCA > NC_000913/1672983‑1673218 | aCGGCTTGAGAAAGCGCACTAAAGGCAGCCAGCACCGCCGCCAGGGAGAGCAAGCCAAATATTTTGCGACGAAAGCCGTCAGAAAATTTCAAAAAGACGTTAGCAACGATTTCCAGCACGATTGCCAATGCCAGTCAgg < 2:505458/139‑1 (MQ=255) tGAGAAAGCGCACTAAAGGCAGCCAGCACCGCCGCCAGGGAGAGCAAGCCAAATATTTTGCGACGAAAGCCGTCAGTAAATTTCAAAAAGACGTTAGCAACGATTTCCAGCACGATTGCCAATGCCAGTCAGGCGGCGt > 2:664966/1‑139 (MQ=255) gaAAGCGCACTAAAGGCAGCCAGCACCGCCGCCAGTGAGAGCAAGCCAAATATCTTTCGACGAAAGCCGTCAGAAAATTTCAAAAAGACGTTAGCAACGATTTCCAGCACGATTGCCAATGCCAGTCAGGCGGCGTGaa < 2:401124/139‑1 (MQ=255) gaAAGCGCACTAAAGGCAGCCAGCACCGCCGCCAGGGAGAGCAAGCCAAATATTTTGCGACGAAAGCCGTCAGAAAATTTCAAAAAGACGTTAGCAACGATTTCCAGCACGATTGCCAATGCCAGTCAGGCGGCGTGaa < 1:752599/139‑1 (MQ=255) gagaGCAAGCCAAATATTTTGCGACGAAAGCCGTCAGAAAATTTCAAAAAGACGTTAGCAACGATTTCCAGCACGATTGCCAATGCCAGTCAGGCGGCGTGAACCCATTCAAACTGCGCCATGGTTCACCTCCAGTTCa < 1:664966/139‑1 (MQ=255) agCAAGCCAAATATTTTGCGACGAAAGCCGTCAGAAAATTTCAAAAAGACGTTAGCAACGATTTCCAGCACGATTGCCAATGCCAGTCAGGCGGCGTGaa > 1:29198/1‑100 (MQ=255) agCAAGCCAAATATTTTGCGACGAAAGCCGTCAGAAAATTTCAAAAAGACGTTAGCAACGATTTCCAGCACGATTGCCAATGCCAGTCAGGCGGCGTGaa < 2:29198/100‑1 (MQ=255) cAAGCCAAATATTTTGCGACGAAAGCCGTCAGAAAATTTCAAAAAGACGTTAGCAACGATTTCCAGCACGATTGCCAATGCCAGTCAGGCGGCGTGAACCCATTCAAACTGCGCCATGGTTc < 1:234065/122‑1 (MQ=255) cAAGCCAAATATTTTGCGACGAAAGCCGTCAGAAAATTTCAAAAAGACGTTAGCAACGATTTCCAGCACGATTGCCAATGCCAGTCAGGCGGCGTGAACCCATTCAAACTGCGCCATGGTTc > 2:234065/1‑122 (MQ=255) cGTTAGCAACGATTTCCAGCACGATTGCCAATGCCAGTCAGGCGGCGTGAACCCATTCAAACTGCGCCATGGTTCACCTCCAGTTCAGGTTTACGCGCTTTACGGGTACCTGATTTTATCAACACAATCCCGGCGACCa < 1:557619/139‑1 (MQ=255) ttGCCAATGCCAGTCAGGCGGCGTGAACCCATTCAAACTGCGCCATGGTTCACCTc < 1:895298/56‑1 (MQ=255) ttGCCAATGCCAGTCAGGCGGCGTGAACCCATTCAAACTGCGCCATGGTTCACCTc > 2:895298/1‑56 (MQ=255) | ACGGCTTGAGAAAGCGCACTAAAGGCAGCCAGCACCGCCGCCAGGGAGAGCAAGCCAAATATTTTGCGACGAAAGCCGTCAGAAAATTTCAAAAAGACGTTAGCAACGATTTCCAGCACGATTGCCAATGCCAGCCAGGCGGCGTGAACCCATTCAAACTGCGCCATGGTTCACCTCCAGTTCAGGTTTACGCGCTTTACGGGTACCTGATTTTATCAACACAATCCCGGCGACCA > NC_000913/1672983‑1673218 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |