Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,370,336	G→A	A107T (GCC→ACC)	arnD →	undecaprenyl phosphate‑alpha‑L‑ara4FN deformylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,370,336	0	G	A	100.0%	128.5 / NA	41	A107T (GCC→ACC)	arnD	undecaprenyl phosphate‑alpha‑L‑ara4FN deformylase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (23/18);  total (23/18)

CAAACGCGGCATCGCTTTATGGCTGGGATATTTTACTGGCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACGCCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTCAACCGGTAACCTGTTCTGCCGCTGC  >  NC_000913/2370208‑2370466                                                                                                                                 |                                                                                                                                   cAAACGCGGCATCGCTTTATGGCTGGGATATTTTACTGGCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCa                                                                                                                          >  2:69905/1‑139 (MQ=255)           aTCGCTTTATGGCTGGGATATTTTACTGGCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTgg                                                                                                                <  2:734806/139‑1 (MQ=255)                            atatTTTACTGGCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTaa                                                                                               >  1:662602/1‑139 (MQ=255)                                     tGGCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAACGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCg                                                                                      <  2:667574/139‑1 (MQ=255)                                      ggCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGt                                                                                                       <  1:214597/121‑1 (MQ=255)                                      ggCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGt                                                                                                       >  2:214597/1‑121 (MQ=255)                                                 ccTGGCCAGGTAAAGAGATTGGTCATGCCAATGTCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGAt                                                                          >  1:770307/1‑139 (MQ=255)                                                 ccTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGAt                                                                          >  2:299521/1‑139 (MQ=255)                                                 ccTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGAt                                                                          >  2:128375/1‑139 (MQ=255)                                                    ggCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga                                                                       <  1:128375/139‑1 (MQ=255)                                                      ccAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCa                                                                                                                          <  2:383319/86‑1 (MQ=255)                                                      ccAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCa                                                                                                                          >  1:383319/1‑86 (MQ=255)                                                                    tGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga                                                                       >  2:439895/1‑123 (MQ=255)                                                                    tGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga                                                                       <  1:439895/123‑1 (MQ=255)                                                                                tGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGc                                                                                                                    <  2:271985/66‑1 (MQ=255)                                                                                tGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGc                                                                                                                    >  1:271985/1‑66 (MQ=255)                                                                                tGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga                                                                       >  2:230374/1‑111 (MQ=255)                                                                                tGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga                                                                       <  1:230374/111‑1 (MQ=255)                                                                                tGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTg                                           >  2:719231/1‑139 (MQ=255)                                                                                 gCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGGCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTgg                                          >  1:621348/1‑139 (MQ=255)                                                                                     atatCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGc                                                                                                               >  2:725820/1‑66 (MQ=255)                                                                                     atatCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGc                                                                                                               <  1:725820/66‑1 (MQ=255)                                                                                     atatCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCg                                                  >  1:652816/1‑127 (MQ=255)                                                                                     atatCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCg                                                  <  2:652816/127‑1 (MQ=255)                                                                                           ttCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCgg                                                                                                  >  1:583737/1‑73 (MQ=255)                                                                                           ttCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCgg                                                                                                  <  2:583737/73‑1 (MQ=255)                                                                                           ttCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTAt                                <  2:755105/139‑1 (MQ=255)                                                                                           ttCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTAt                                <  2:770307/139‑1 (MQ=255)                                                                                           ttCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTAt                                >  1:755105/1‑139 (MQ=255)                                                                                                gAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTc                           >  1:784745/1‑139 (MQ=255)                                                                                                gAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTc                           <  1:69905/139‑1 (MQ=255)                                                                                                 aaGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga                                                                       <  2:290574/94‑1 (MQ=255)                                                                                                 aaGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga                                                                       >  1:290574/1‑94 (MQ=255)                                                                                                    cGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCa                                                <  2:395191/114‑1 (MQ=255)                                                                                                    cGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCa                                                >  1:395191/1‑114 (MQ=255)                                                                                                     ggCTAAGCATCACGAAGTCGGCATGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCAGTCAACCg                      <  2:756518/139‑1 (MQ=255)                                                                                                      gCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTCAACCgg                     >  2:70301/1‑139 (MQ=255)                                                                                                                 cGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTCAACCGGTAACCTGTTCt          >  2:14386/1‑139 (MQ=255)                                                                                                                         gCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGa                                                                                         >  1:722427/1‑52 (MQ=255)                                                                                                                         gCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGa                                                                                         <  2:722427/52‑1 (MQ=255)                                                                                                                         gCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTCAACCGGTAACCTGTTCTGCCGCTGc  >  1:467381/1‑139 (MQ=255)                                                                                                                                 |                                                                                                                                   CAAACGCGGCATCGCTTTATGGCTGGGATATTTTACTGGCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACGCCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTCAACCGGTAACCTGTTCTGCCGCTGC  >  NC_000913/2370208‑2370466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑