Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,468,106 T→C A84A (GCT→GCC)  gtrA → CPS‑53 (KpLE1) prophage, bactoprenol‑linked glucose translocase/flippase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,468,1060TC100.0% 200.8 / NA 57A84A (GCT→GCC) gtrACPS‑53 (KpLE1) prophage, bactoprenol‑linked glucose translocase/flippase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/26);  total (31/26)

CGTTGTGGCTGTGAGCTTTAGCTTCTTCGCGAATGCAAAATTCACATTCAAGGCATCGACTACAACGATGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCTGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAAGATATCTCTTGTAGTTCCTGTCT  >  NC_000913/2467980‑2468241
                                                                                                                              |                                                                                                                                       
cGTTGTGGCTGTGAGCTTTAGCTTCTTCGCGAATGCAAAATTCACATTCAAGGCATCGACTACAACGATGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATgc                                                                                                                             <  2:389985/139‑1 (MQ=255)
                        cttcGCGAATGCAAAATTCACATTCAAGGCATCGACTACAACGATGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCtt                                                                                                     >  1:119327/1‑139 (MQ=255)
                          tcGCGAATGCAAAATTCACATTCAAGGCATCGACTACAACGATGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTccccc                                                                                                                  >  2:498735/1‑124 (MQ=255)
                          tcGCGAATGCAAAATTCACATTCAAGGCATCGACTACAACGATGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTccccc                                                                                                                  <  1:498735/124‑1 (MQ=255)
                                              ttCAAGGCATCGACTACAACGATGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGcc                                                                               <  1:9647/139‑1 (MQ=255)
                                                  aGGCATCGACTACAACGATGCTGTACATACATTATGTTGGGTTCATTGGGACACTGAGTGCTACTGTTGGATGGGCCTCTGATAGATACACACTTCCCCCGATTAAAACTATTGTAACATTCTCCACCATCatactcgt                                                                           >  2:177706/1‑132 (MQ=255)
                                                  aGGCATCGACTACAACGATGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGgt                                                                           >  2:13171/1‑139 (MQ=255)
                                                              cAACGATGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTcccc                                                                                                                   >  1:140261/1‑87 (MQ=255)
                                                              cAACGATGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTcccc                                                                                                                   <  2:140261/87‑1 (MQ=255)
                                                                    tGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTccccc                                                                                                                  <  1:502857/82‑1 (MQ=255)
                                                                    tGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTccccc                                                                                                                  >  2:502857/1‑82 (MQ=255)
                                                                    tGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTc                                                         >  2:864905/1‑139 (MQ=255)
                                                                           cATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCgatg                                                                                                              >  2:249308/1‑79 (MQ=255)
                                                                           cATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCgatg                                                                                                              <  1:249308/79‑1 (MQ=255)
                                                                            aTGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCa                                                 <  1:864905/139‑1 (MQ=255)
                                                                             tGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCAt                                                <  1:466677/139‑1 (MQ=255)
                                                                                     gTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGgccgct                                                                                                                                      <  2:198936/45‑1 (MQ=255)
                                                                                     gTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGgccgct                                                                                                                                      >  1:198936/1‑45 (MQ=255)
                                                                                     gTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCAt                                                <  2:793991/131‑1 (MQ=255)
                                                                                     gTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCAt                                                >  1:55049/1‑131 (MQ=255)
                                                                                     gTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCAt                                                >  1:793991/1‑131 (MQ=255)
                                                                                     gTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCAt                                                <  2:55049/131‑1 (MQ=255)
                                                                                     gTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTa                                        <  1:91247/139‑1 (MQ=255)
                                                                                         ggTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGa                                    >  1:619848/1‑139 (MQ=255)
                                                                                          gTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAgggct                                   >  2:547503/1‑137 (MQ=255)
                                                                                          gTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGAt                                   >  2:605685/1‑139 (MQ=255)
                                                                                            tCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCa                                                                                                                          <  2:856020/50‑1 (MQ=255)
                                                                                            tCATGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCa                                                                                                                          >  1:856020/1‑50 (MQ=255)
                                                                                              aTGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTcccc                                                                                                                   >  1:233506/1‑55 (MQ=255)
                                                                                              aTGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTcccc                                                                                                                   <  2:233506/55‑1 (MQ=255)
                                                                                              aTGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAActc                                                                                                       >  2:440199/1‑67 (MQ=255)
                                                                                              aTGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAActc                                                                                                       <  1:440199/67‑1 (MQ=255)
                                                                                              aTGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTg                                                                             <  1:235732/93‑1 (MQ=255)
                                                                                              aTGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTg                                                                             >  2:235732/1‑93 (MQ=255)
                                                                                              aTGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCa                                                 >  1:871285/1‑121 (MQ=255)
                                                                                              aTGGGGACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCa                                                 <  2:871285/121‑1 (MQ=255)
                                                                                              aTGGGGACACTGAGTGCGACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTGACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGa                               >  2:531885/1‑139 (MQ=255)
                                                                                                   gACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCa                                                                                     >  1:839637/1‑80 (MQ=255)
                                                                                                   gACACTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCa                                                                                     <  2:839637/80‑1 (MQ=255)
                                                                                                       cTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAAGat                      <  2:280757/139‑1 (MQ=255)
                                                                                                       cTGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAAGat                      <  2:4013/139‑1 (MQ=255)
                                                                                                        tGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATaa                                                                                                          >  2:632216/1‑54 (MQ=255)
                                                                                                        tGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATaa                                                                                                          <  1:632216/54‑1 (MQ=255)
                                                                                                        tGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGACAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCAt                                                >  2:644482/1‑112 (MQ=255)
                                                                                                        tGAGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGACAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCAt                                                <  1:644482/112‑1 (MQ=255)
                                                                                                          aGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAAg                        >  1:82678/1‑134 (MQ=255)
                                                                                                          aGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAAg                        <  2:82678/134‑1 (MQ=255)
                                                                                                          aGTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTCTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAAGATAtc                   >  1:268487/1‑139 (MQ=255)
                                                                                                           gTGCTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAAGATAtct                  <  1:547503/139‑1 (MQ=255)
                                                                                                             gCTACTGTTGGTTGGGCCGCTGTTATATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAATATATctct                <  2:141426/139‑1 (MQ=255)
                                                                                                              cTACTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAAGATATCTCtt               >  1:782122/1‑139 (MQ=255)
                                                                                                                 cTGTTGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAAGATATCTCTTGTa            >  2:411289/1‑139 (MQ=255)
                                                                                                                    ttGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGt                                                                    <  1:566975/80‑1 (MQ=255)
                                                                                                                    ttGGATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGt                                                                    >  2:566975/1‑80 (MQ=255)
                                                                                                                      ggATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCa                                                 <  2:902793/97‑1 (MQ=255)
                                                                                                                      ggATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCa                                                 >  1:902793/1‑97 (MQ=255)
                                                                                                                      ggATGGGCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAAGATATCTCTTGTAGTTcc       >  1:503264/1‑139 (MQ=255)
                                                                                                                           ggCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCAtt                                               <  1:322330/94‑1 (MQ=255)
                                                                                                                           ggCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCAtt                                               >  2:322330/1‑94 (MQ=255)
                                                                                                                           ggCCGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAAGATATCTCTTGTAGTTCCTGTCt  >  1:141883/1‑139 (MQ=255)
                                                                                                                              |                                                                                                                                       
CGTTGTGGCTGTGAGCTTTAGCTTCTTCGCGAATGCAAAATTCACATTCAAGGCATCGACTACAACGATGCGCTACATGCTATATGTTGGGTTCATGGGGACACTGAGTGCTACTGTTGGATGGGCTGCTGATAGATGCGCACTTCCCCCGATGATAACTCTTGTCACCTTCTCCGCCATCAGCCTGGTGTGCGGTTTCGTCTATTCAAAGTTCATTGTCTTTAGGGATGCGAAATGAAGATATCTCTTGTAGTTCCTGTCT  >  NC_000913/2467980‑2468241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑