Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,522,650	G→A	intergenic (‑173/+79)	xapR ← / ← xapB	transcriptional activator of xapAB/xanthosine transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,522,650	0	G	A	100.0%	149.9 / NA	48	intergenic (‑173/+79)	xapR/xapB	transcriptional activator of xapAB/xanthosine transporter
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (26/22);  total (26/22)

TCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGG‑ATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACGCCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGATGCTTTATCTTTTCAGGGTCATGATTATATTTAAACCC  >  NC_000913/2522518‑2522785                                                                                                                                      |                                                                                                                                        tCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGG‑ATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGgaa                                                                                                                                   >  2:253818/1‑139 (MQ=255)   aTGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGG‑ATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGgaaga                                                                                                                                 <  2:504478/139‑1 (MQ=255)                 ttCACCACCAGATATCCGACATACATAAACACAATGG‑ATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGaaaataaa                                                                                                                          >  2:448386/1‑132 (MQ=255)                 ttCACCACCAGATATCCGACATACATAAACACAATGG‑ATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGaaaataaa                                                                                                                          <  1:448386/132‑1 (MQ=255)                  cacccaccaAAT‑TCCGACCAACAAAAAAAACATGGAATAAAAAACCCGTTAA‑AAAATTGGGAAAGGAAAAGGCAAACGCAACATTGTTAACAAAGCCACAATTACCAAACCAACACCGGAAGAAAATAAAATATCTTTc                                                                                                                 <  2:713751/136‑1 (MQ=255)                      caccaGATATCCGACATACATAAACACAATGG‑ATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAA‑CAAAAACGGAAGaaaaaaaaaaaacctttaact                                                                                                             >  1:713751/1‑127 (MQ=255)                                           aaaCACAATGG‑ATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAag                                                                                         <  2:397/139‑1 (MQ=255)                                              cacaATGG‑ATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAagcag                                                                                      <  1:611235/139‑1 (MQ=255)                                                  aTGG‑ATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAag                                                                                         <  2:358775/132‑1 (MQ=255)                                                  aTGG‑ATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAag                                                                                         >  1:358775/1‑132 (MQ=255)                                                   tGG‑ATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTATg                                                                                 >  2:175209/1‑139 (MQ=255)                                                          atatACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGgaa                                                                                                                                   >  1:324570/1‑83 (MQ=255)                                                          atatACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGgaa                                                                                                                                   <  2:324570/83‑1 (MQ=255)                                                              aCCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCttt                                                                                                   <  1:782600/111‑1 (MQ=255)                                                              aCCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCttt                                                                                                   >  2:782600/1‑111 (MQ=255)                                                                ccGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTc                                                                                                                 >  1:304342/1‑95 (MQ=255)                                                                ccGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTc                                                                                                                 <  2:304342/95‑1 (MQ=255)                                                                ccGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGcc                                                                     >  2:582669/1‑139 (MQ=255)                                                                 cGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCcg                                                                    >  2:781034/1‑139 (MQ=255)                                                                 cGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCcg                                                                    <  1:643161/139‑1 (MQ=255)                                                                  ggTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCcgc                                                                   >  2:104679/1‑139 (MQ=255)                                                                    tAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGa                                                                 <  2:510574/139‑1 (MQ=255)                                                                     aaTACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGaa                                                                >  1:382620/1‑139 (MQ=255)                                                                            ttGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCtttt                                                         >  1:154560/1‑139 (MQ=255)                                                                             tGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAagag                                                                            <  1:802586/119‑1 (MQ=255)                                                                             tGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAagag                                                                            >  2:802586/1‑119 (MQ=255)                                                                                tACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATg                                                     <  1:582669/139‑1 (MQ=255)                                                                                       aTAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCAcc                                              >  1:384048/1‑139 (MQ=255)                                                                                          ggCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCttt                                                                                                   >  2:346566/1‑83 (MQ=255)                                                                                          ggCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCttt                                                                                                   <  1:346566/83‑1 (MQ=255)                                                                                          ggCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCt                                           >  2:533415/1‑139 (MQ=255)                                                                                                cgcACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGgaa                                                                                                                                   <  1:607491/45‑1 (MQ=255)                                                                                                cgcACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGgaa                                                                                                                                   >  2:607491/1‑45 (MQ=255)                                                                                                cgcACGATTGTAAACAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGTTGc                                     >  1:599481/1‑139 (MQ=255)                                                                                                            aaCAAAGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGATGCTTTATCTTTTCa                         <  2:384048/139‑1 (MQ=255)                                                                                                                aaGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGATGCTTTATCTTTTCAGGGt                     <  2:154560/139‑1 (MQ=255)                                                                                                                 aGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTc                                                                                                                 <  1:787432/46‑1 (MQ=255)                                                                                                                 aGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTc                                                                                                                 >  2:787432/1‑46 (MQ=255)                                                                                                                 aGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAAt                                                               >  2:388076/1‑96 (MQ=255)                                                                                                                 aGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAAt                                                               <  1:388076/96‑1 (MQ=255)                                                                                                                 aGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGAt                                       <  2:862621/120‑1 (MQ=255)                                                                                                                 aGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGAt                                       >  1:862621/1‑120 (MQ=255)                                                                                                                 aGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGATGCTTTATCtttt                           <  2:694098/132‑1 (MQ=255)                                                                                                                 aGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGATGCTTTATCtttt                           >  1:694098/1‑132 (MQ=255)                                                                                                                 aGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGATGCTTTATCTTTTCAGGGTc                    >  1:669906/1‑139 (MQ=255)                                                                                                                 aGCACCAATACCAAAACCAACACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGATGCTTTATCTTTTCAGGGTc                    >  1:203476/1‑139 (MQ=255)                                                                                                                       aaTACCAAAACCAACACCGGAAGAAAATACAATATCTTTCACTAAGTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGATGCTTTATCTTTTCAGGGTCattatt              <  2:599481/139‑1 (MQ=255)                                                                                                                                   aaCACCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGATGCTTTATCTTTTCAGGGTCATGATTATATTTAAAccc  >  2:475756/1‑139 (MQ=255)                                                                                                                                      |                                                                                                                                        TCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGG‑ATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGATTGTAAACAAAGCACCAATACCAAAACCAACGCCGGAAGAAAATAAAATATCTTTCACTAATTAACCTTTATCATAAAAGCAGCTCTGAAGAGCAGAGCCGCGAATCCTTTTAATGAGTCACCGCTCGATGCTTTATCTTTTCAGGGTCATGATTATATTTAAACCC  >  NC_000913/2522518‑2522785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑