Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	183,607	Δ1 bp	coding (1145/1158 nt)	cdaR →	carbohydrate diacid regulon transcriptional regulator, autoregulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	183,607	0	A	.	100.0%	217.3 / NA	52	coding (1145/1158 nt)	cdaR	carbohydrate diacid regulon transcriptional regulator, autoregulator
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (30/22);  total (30/22)

GCTGGCAACGTCAAAGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTT  >  NC_000913/183473‑183740                                                                                                                                        |                                                                                                                                      gCTGGCAACGTCAAAGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAag                                                                                                                                  <  2:1035094/139‑1 (MQ=255)  cTGGCAACGTCAAAGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAaga                                                                                                                                 >  2:262358/1‑139 (MQ=255)  cTGGCAACGTCAAAGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAaga                                                                                                                                 >  1:278087/1‑139 (MQ=255)                    ttgttTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTa                                                                                                               >  2:759230/1‑139 (MQ=255)                                 gTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTG‑‑TGGAGAGGGGGAAGTTATTCGGTTAGGTTTAgggggtg                                                                                                 >  1:754157/1‑137 (MQ=255)                                  tAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGgcggcg                                                                                                 <  1:759230/139‑1 (MQ=255)                                          tGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCa                                                                                         >  1:881242/1‑139 (MQ=255)                                          tGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCa                                                                                         >  2:764644/1‑139 (MQ=255)                                               tATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTccc                                                                                    >  1:86175/1‑139 (MQ=255)                                               tATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTccc                                                                                    <  2:86175/139‑1 (MQ=255)                                               tATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTccc                                                                                    >  1:636977/1‑139 (MQ=255)                                                 tCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCt                                                                                  >  1:900949/1‑139 (MQ=255)                                                  ccggttaaatgTAAATTGGAACTGGGCCGGGTTGGTTTGGGGAATTTTGGATGACAGG‑TGGTTCTTTATGTTGCCTTAAAACTTG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTc                                                                                 <  2:754157/129‑1 (MQ=255)                                                  cGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTc                                                                                 <  2:636977/139‑1 (MQ=255)                                                  cGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTc                                                                                 >  1:203083/1‑139 (MQ=255)                                                  cGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTc                                                                                 >  2:527674/1‑139 (MQ=255)                                                    gCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAg                                                                               >  2:353683/1‑139 (MQ=255)                                                        aaTCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCg                                                                           <  2:881242/139‑1 (MQ=255)                                                         aTCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGa                                                                          >  1:266943/1‑139 (MQ=255)                                                          tCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGaa                                                                         <  1:764644/139‑1 (MQ=255)                                                            gTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACACGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAgg                                                                       <  2:900949/139‑1 (MQ=255)                                                               tatCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGCGTa                                                                    >  2:1085099/1‑139 (MQ=255)                                                                    gAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGC‑TTACAACTGG‑TGAAGAGCGGTAAGTTATGCGtt                                                                                                                <  1:1063876/89‑1 (MQ=255)                                                                    gAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGC‑TTACAACTGG‑TGAAGAGCGGTAAGTTATGCGtt                                                                                                                >  2:1063876/1‑89 (MQ=255)                                                                       cTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGc                                                                              >  1:1227214/1‑121 (MQ=255)                                                                       cTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGc                                                                              <  2:1227214/121‑1 (MQ=255)                                                                       cTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGaa                                                            <  1:1085099/139‑1 (MQ=255)                                                                         gACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATg                                                          >  1:253691/1‑139 (MQ=255)                                                                          aCCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGaa                                                                         >  2:1270882/1‑123 (MQ=255)                                                                          aCCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGaa                                                                         <  1:1270882/123‑1 (MQ=255)                                                                               gCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCa                                                                                         >  1:1085799/1‑102 (MQ=255)                                                                               gCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCa                                                                                         <  2:1085799/102‑1 (MQ=255)                                                                               gCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCg                                                                           <  1:462185/116‑1 (MQ=255)                                                                               gCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCg                                                                           >  2:462185/1‑116 (MQ=255)                                                                               gCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGaa                                                    >  1:148704/1‑139 (MQ=255)                                                                                       tGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGt                                            <  1:353683/139‑1 (MQ=255)                                                                                       tGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGt                                            <  2:148704/139‑1 (MQ=255)                                                                                         ggCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTGTGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATCAACCGTCa                                          >  2:994019/1‑139 (MQ=255)                                                                                         ggCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCa                                          >  1:1581681/1‑139 (MQ=255)                                                                                                          ggTTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTAc                          >  1:318888/1‑139 (MQ=255)                                                                                                             tgctgcTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTAcgcg                       <  1:994019/139‑1 (MQ=255)                                                                                                             tgctgcTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTAcgcg                       <  1:527674/139‑1 (MQ=255)                                                                                                                     tATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGtttt               >  2:24041/1‑139 (MQ=255)                                                                                                                       tgtgGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTc             >  1:330112/1‑139 (MQ=255)                                                                                                                       tgtgGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTc             >  1:1496411/1‑139 (MQ=255)                                                                                                                            cGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGt                                            <  2:1138600/103‑1 (MQ=255)                                                                                                                            cGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGt                                            >  1:1138600/1‑103 (MQ=255)                                                                                                                            cGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCggg                                   >  1:775704/1‑112 (MQ=255)                                                                                                                            cGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCggg                                   <  2:775704/112‑1 (MQ=255)                                                                                                                               tACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCgg     >  2:95982/1‑139 (MQ=255)                                                                                                                                 cAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCt   <  2:1496411/139‑1 (MQ=255)                                                                                                                                  aaCTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCtt  <  2:330112/139‑1 (MQ=255)                                                                                                                                        |                                                                                                                                      GCTGGCAACGTCAAAGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTT‑GATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTT  >  NC_000913/183473‑183740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑