Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	883,665	IS1 (–) +9 bp		[mdfA]	[mdfA]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 258675	NA (NA)	74 (1.100)	50/204	0.2	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	883665 =	0 (0.000)					intergenic (‑277/‑8)	ybjG/mdfA	undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein
*	?	NC_000913	= 883673	0 (0.000)	89 (1.330)	42/204	0.4	100%	coding (1/1233 nt)	mdfA	multidrug efflux system protein
	?	NC_000913	= 1050545	NA (NA)					noncoding (768/768 nt)	IS1	repeat region

AACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/883539‑883673 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT  <  NC_000913/1050545‑1050411                                                                                                                                                                                                                                                                                AACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTA                                                                                                                                     <  2:216402/139‑1       AAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACT                                                                                                                               <  1:903461/139‑1                    TATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGAT                                                                                                                  >  1:1582835/1‑139                        CTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             >  2:983752/1‑124                        CTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             <  1:983752/124‑1                           GTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTT                                                                                                           >  2:1406093/1‑139                           GTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             >  1:111171/1‑121                           GTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             <  2:111171/121‑1                            TAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTT                                                                                                          <  2:1582835/139‑1                                   GTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTT                                                                                                          <  1:1050348/132‑1                                   GTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTT                                                                                                          >  2:1050348/1‑132                                     AAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA                                                                                                 >  2:612348/1‑139                                     AAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGAT                                                                                                                  >  1:778116/1‑122                                     AAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGAT                                                                                                                  <  2:778116/122‑1                                      AGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACT                                                                                                                               <  2:825784/108‑1                                      AGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACT                                                                                                                               >  1:825784/1‑108                                           GTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTA                                                                                                                       <  1:683816/111‑1                                           GTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTA                                                                                                                       >  2:683816/1‑111                                            TGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATA                                                                                                                 <  1:145752/116‑1                                            TGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATA                                                                                                                 >  2:145752/1‑116                                            TGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGAT                                                                                                                  <  1:255870/115‑1                                            TGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGAT                                                                                                                  >  2:255870/1‑115                                            TGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTAT                                                                                                                      >  1:809188/1‑111                                            TGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTAT                                                                                                                      <  2:809188/111‑1                                            TGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             <  1:105996/104‑1                                            TGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             >  2:105996/1‑104                                            TGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             <  2:644512/104‑1                                            TGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             >  1:644512/1‑104                                            TGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAAT                                                                                                                                   >  1:675341/1‑98                                            TGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAAT                                                                                                                                   <  2:675341/98‑1                                              CTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTT                                                                                                           >  2:1418963/1‑120                                              CTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTT                                                                                                           <  1:1418963/120‑1                                              CTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTAT                                                                                                                      <  1:1520922/109‑1                                              CTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTAT                                                                                                                      >  2:1520922/1‑109                                                      TGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTT                                                                                >  1:558074/1‑139                                                      TGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATG                                                                                     <  1:1185718/134‑1                                                      TGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATG                                                                                     >  2:1185718/1‑134                                                      TGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAA                                                                                                                                    >  1:797360/1‑87                                                      TGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAA                                                                                                                                    <  2:797360/87‑1                                                        GTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTT                                                                                                            <  1:792295/109‑1                                                        GTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTT                                                                                                            <  2:1294580/109‑1                                                        GTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTT                                                                                                            >  2:792295/1‑109                                                        GTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTT                                                                                                            >  1:1294580/1‑109                                                        GTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             >  1:1577136/1‑92                                                        GTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             <  2:1577136/92‑1                                                            CAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG                                                                          <  2:179369/139‑1                                                                    AAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCA                                                                  <  1:612348/139‑1                                                                                            CTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAA                                                                                                                           >  1:437846/1‑58                                                                                            CTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAA                                                                                                                           <  2:437846/58‑1                                                                                                      ACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             <  1:1008766/46‑1                                                                                                      ACTCTGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             >  2:1008766/1‑46                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGT                            >  2:1102433/1‑139                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTC                                        <  1:1546996/127‑1                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTC                                        >  2:1546996/1‑127                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAT                                                             <  2:1167162/106‑1                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAT                                                             >  1:1167162/1‑106                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAC                                                                 <  2:964898/102‑1                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG                                                                               <  2:538340/88‑1                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG                                                                               >  1:538340/1‑88                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGAAAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAC                                                                 >  1:964898/1‑102                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             <  2:1557341/42‑1                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             >  1:1557341/1‑42                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             >  1:876924/1‑42                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             <  2:876924/42‑1                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACT                                                                                                                               >  1:488290/1‑40                                                                                                          TGCGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACT                                                                                                                               <  2:488290/40‑1                                                                                                            CGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGC                          >  2:672955/1‑139                                                                                                            CGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACG                                                   <  1:1081346/114‑1                                                                                                            CGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACG                                                   >  2:1081346/1‑114                                                                                                            CGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTC                                                                    >  2:1296317/1‑97                                                                                                            CGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTC                                                                    <  1:1296317/97‑1                                                                                                            CGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             <  1:739969/40‑1                                                                                                            CGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             <  2:398903/40‑1                                                                                                            CGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             <  2:950863/40‑1                                                                                                            CGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             >  1:950863/1‑40                                                                                                            CGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             >  2:739969/1‑40                                                                                                            CGCGATTATTATTGGCGAAGAAATTGCAGGTAATGACTCC                                                                                                                             >  1:398903/1‑40                                                                                                                           CGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAG           >  1:647313/1‑139                                                                                                                           CGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT                                                                                                     <  2:1659984/49‑1                                                                                                                           CGAAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT                                                                                                     >  1:1659984/1‑49                                                                                                                           CGAAGAAATTGCAGGTAATGACTCCAACTTATTGATA                                                                                                                 >  1:641420/1‑37                                                                                                                           CGAAGAAATTGCAGGTAATGACTCCAACTTATTGATA                                                                                                                 <  2:641420/37‑1                                                                                                                           CGAAGAAATTGCAGGTAATGACTCCAACTTATTGAT                                                                                                                  <  2:830336/36‑1                                                                                                                           CGAAGAAATTGCAGGTAATGACTCCAACTTATTGAT                                                                                                                  >  1:830336/1‑36                                                                                                                             AAGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGAT         <  1:1406093/139‑1                                                                                                                              AGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATT        >  1:504793/1‑139                                                                                                                              AGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT                                                                                                     <  1:1212674/46‑1                                                                                                                              AGAAATTGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT                                                                                                     >  2:1212674/1‑46                                                                                                                                    TGCAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT  >  2:1249084/1‑139                                                                                                                                                                                                                                                                                AACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/883539‑883673 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT  <  NC_000913/1050545‑1050411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.