Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
JC JC | NC_000913 | 1,293,196 | IS5 (+) +4 bp | intergenic (‑274/‑328) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 1293196 = | 0 (0.000) | 96 (1.430) | 60/204 | 0.0 | 100% | intergenic (‑274/‑331) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
? | NC_000913 | = 1300693 | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | = 1293199 | 0 (0.000) | 79 (1.180) | 48/204 | 0.2 | 100% | intergenic (‑277/‑328) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
? | NC_000913 | 1299499 = | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region |
TTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1293063‑1293199 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGA > NC_000913/1299499‑1299633 TTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCGCGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGG < 1:754224/139‑1 CGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAG < 2:885316/139‑1 TTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCGTGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGA > 2:504014/1‑134 TTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCGTGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGA < 1:504014/134‑1 TTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCTCATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCA > 1:1553447/1‑139 TTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATAT < 2:523916/131‑1 TTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATAT > 1:523916/1‑131 ACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCC > 2:1032643/1‑120 ACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCGTCTGTATTAGGGAAGGTGCGAACAAGTCC < 1:1032643/120‑1 GATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGA < 1:1310796/101‑1 GATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGA > 2:1310796/1‑101 ATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTG > 2:1652729/1‑105 ATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTG < 1:1652729/105‑1 TGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAG < 1:1068485/125‑1 TGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAG > 2:1068485/1‑125 TGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATA > 1:1451925/1‑121 TGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATA < 2:1451925/121‑1 TGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGG > 2:246535/1‑98 TGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGG < 1:246535/98‑1 CGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTAATCTGGAGCCATAGA > 2:427334/1‑139 GAGGTTAAAACTTCCTGATTCATGTCTCATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA < 2:1553447/139‑1 GAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTAATCTGGAGCCATAGAACA < 1:427334/139‑1 TAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTT > 2:1572737/1‑139 AACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCC < 1:428679/92‑1 AACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCC > 2:428679/1‑92 ATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAA > 2:613687/1‑139 GTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACT > 2:358271/1‑139 GTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTC > 2:534257/1‑75 GTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTC < 1:534257/75‑1 GTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAG < 2:711057/73‑1 GTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAG > 1:711057/1‑73 TGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGG > 1:205213/1‑108 TGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGG < 2:205213/108‑1 GGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGT > 1:312495/1‑51 GGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGT < 2:312495/51‑1 GAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATA > 2:594593/1‑67 GAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATA < 1:594593/67‑1 ATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG > 2:1095583/1‑132 ATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG < 1:1095583/132‑1 ATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA > 2:179167/1‑98 ATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA < 1:179167/98‑1 ATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAA < 2:208925/96‑1 ATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAA > 1:208925/1‑96 GCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAA > 2:902449/1‑130 GCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAA < 1:902449/130‑1 GCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAG > 2:1495452/1‑58 GCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAG < 1:1495452/58‑1 GCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAG > 2:585087/1‑45 GCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAG < 1:585087/45‑1 GCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACA < 2:530046/43‑1 GCTGACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACA > 1:530046/1‑43 GACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCC > 1:1645703/1‑45 GACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCC < 2:1645703/45‑1 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGC > 1:418024/1‑139 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGC > 1:491194/1‑139 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGC > 1:145893/1‑139 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTA < 1:41372/109‑1 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTA > 2:41372/1‑109 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAG > 2:1076063/1‑74 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTCGAG < 1:1076063/74‑1 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGAT > 2:236439/1‑49 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGAT > 1:1594516/1‑49 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGAT < 2:1594516/49‑1 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGAT < 1:236439/49‑1 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCC > 2:1336861/1‑44 ACGACCTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCC < 1:1336861/44‑1 CTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGT < 1:1572737/139‑1 CTTTCAGTCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGT < 1:613687/139‑1 TCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACA < 1:1203050/109‑1 TCTTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACA > 2:1203050/1‑109 TTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAG > 2:416063/1‑60 TTCTGTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAG < 1:416063/60‑1 GTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATT > 1:564655/1‑110 GTATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATT < 2:564655/110‑1 TATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGT > 1:564609/1‑125 TATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGT < 2:564609/125‑1 ATTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATT‑AGCAGTAAGCGCCGTCAGACCAGAAAAGAGA < 1:358271/139‑1 TAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCTGACA > 1:1453854/1‑99 TAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACA < 2:1453854/99‑1 TTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1293063‑1293199 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGA > NC_000913/1299499‑1299633 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |