| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,862,524 | Δ3 bp | pseudogene (1078‑1080/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3862523 | 2 (0.030) | 72 (1.070) | 48/204 | 0.2 | 97.3% | pseudogene (1081/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| ? | NC_000913 | 3862527 = | 2 (0.030) | pseudogene (1077/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component | |||||
GGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGG > NC_000913/3862391‑3862651 | gtgcggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcac > 2:1326355‑M2/137‑139 (MQ=255) cggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccac > 1:433341‑M2/134‑139 (MQ=255) cggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccac > 1:1339478‑M2/134‑139 (MQ=255) gaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac > 2:1174991‑M2/132‑139 (MQ=255) aaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacacca < 2:1339478‑M2/10‑1 (MQ=255) accacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCaaa < 2:546144‑M2/12‑1 (MQ=255) accacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCaaa < 2:1327716‑M2/12‑1 (MQ=255) accacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCaaa > 1:792706‑M2/128‑139 (MQ=255) ggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCg > 2:961839‑M2/111‑139 (MQ=255) ggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCg > 2:643556‑M2/111‑139 (MQ=255) ggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCg > 1:1131123‑M2/111‑139 (MQ=255) taaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttca < 1:1026928‑M2/2‑1 (MQ=255) taaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttca > 2:1026928‑M2/109‑110 (MQ=255) taaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACa < 2:285701‑M2/20‑1 (MQ=255) taaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACa > 1:285701‑M2/109‑128 (MQ=255) cacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGa > 2:346797‑M2/104‑139 (MQ=255) aacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGgc < 1:558706‑M2/39‑1 (MQ=255) aacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGgc < 2:1210491‑M2/39‑1 (MQ=255) aacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGgc > 2:1392179‑M2/101‑139 (MQ=255) cccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcacca < 2:1374867‑M2/5‑1 (MQ=255) cccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcacca > 1:1374867‑M2/99‑103 (MQ=255) tggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGc < 1:346797‑M2/46‑1 (MQ=255) tggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGc < 2:1131123‑M2/46‑1 (MQ=255) tggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGc < 2:792706‑M2/46‑1 (MQ=255) tggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGc < 1:961839‑M2/46‑1 (MQ=255) atttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAg > 2:68295‑M2/89‑125 (MQ=255) atttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAg < 1:68295‑M2/37‑1 (MQ=255) catcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAACACGGCGTGTACCGCaa > 2:1248755‑M2/78‑139 (MQ=255) atatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAg < 1:1174991‑M2/66‑1 (MQ=255) tatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAg > 2:1502283‑M2/73‑109 (MQ=255) tatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAg < 1:1502283‑M2/37‑1 (MQ=255) tatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGc < 2:1279141‑M2/46‑1 (MQ=255) tatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGc > 1:1279141‑M2/73‑118 (MQ=255) tatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGc < 1:1392179‑M2/67‑1 (MQ=255) tccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCaa < 2:433341‑M2/69‑1 (MQ=255) cgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGt > 2:1505682‑M2/67‑93 (MQ=255) cgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGt < 1:1505682‑M2/27‑1 (MQ=255) tggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCaaa > 2:1416726‑M2/65‑76 (MQ=255) tggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCaaa < 1:1416726‑M2/12‑1 (MQ=255) ggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGaa < 1:643556‑M2/76‑1 (MQ=255) gttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttca < 2:320775‑M2/2‑1 (MQ=255) gttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttca > 1:320775‑M2/63‑64 (MQ=255) gttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGgccg < 2:632535‑M2/41‑1 (MQ=255) gttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGgccg > 1:632535‑M2/63‑103 (MQ=255) gctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGt < 1:1120621‑M2/27‑1 (MQ=255) gctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGt > 2:1120621‑M2/60‑86 (MQ=255) catcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTTCGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGc < 1:1184632‑M2/67‑1 (MQ=255) catcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGc > 2:1184632‑M2/54‑120 (MQ=255) gATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCAAAgaga > 2:307846/1‑63 (MQ=255) gATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCAAAgaga < 1:307846/63‑1 (MQ=255) cgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAgg > 1:934172‑M2/51‑139 (MQ=255) ggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAg > 2:186548‑M2/49‑136 (MQ=255) ggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAg < 1:186548‑M2/88‑1 (MQ=255) ggatccagctttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGaa > 1:84841‑M2/49‑129 (MQ=255) ggatccagctttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGaa < 2:84841‑M2/81‑1 (MQ=255) ttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCg > 2:395799‑M2/39‑139 (MQ=255) tgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCgg < 1:1326355‑M2/102‑1 (MQ=255) gcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCa > 2:1398151‑M2/37‑97 (MQ=255) gcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCa < 1:1398151‑M2/61‑1 (MQ=255) gcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCa > 2:1184489‑M2/37‑97 (MQ=255) gcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCa < 1:1184489‑M2/61‑1 (MQ=255) cggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGtt > 2:814876‑M2/36‑139 (MQ=255) aaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGTGGTTCGGt > 2:822346‑M2/32‑139 (MQ=255) cagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAgg > 2:451731‑M2/18‑102 (MQ=255) cagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAgg < 1:451731‑M2/85‑1 (MQ=255) cagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCa < 1:395799‑M2/122‑1 (MQ=255) agacctccgccatgttCACCACACTAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCAt < 2:934172‑M2/123‑1 (MQ=255) agacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCAt < 1:1248486‑M2/123‑1 (MQ=255) acctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATgg > 2:660731‑M2/15‑139 (MQ=255) acctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATgg > 2:1506108‑M2/15‑139 (MQ=255) ctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAAtt > 2:510368‑M2/13‑124 (MQ=255) ctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAAtt < 1:510368‑M2/112‑1 (MQ=255) gccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAAtt < 2:219174‑M2/112‑1 (MQ=255) gccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAAtt > 1:219174‑M2/9‑120 (MQ=255) caccacaccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAAc < 1:1536645/82‑1 (MQ=255) caccacaccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAAc > 2:1536645/1‑82 (MQ=255) | GGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGG > NC_000913/3862391‑3862651 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |