| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,757,753 | Δ5 bp | coding (969‑973/1005 nt) | ldtE ← | murein L,D‑transpeptidase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1757753 | 1757757 | 5 | 74 [0] | [0] 74 | ldtE | murein L,D‑transpeptidase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1757752 | 0 (0.000) | 74 (1.110) | 46/202 | 0.2 | 100% | coding (974/1005 nt) | ldtE | murein L,D‑transpeptidase |
| ? | NC_000913 | 1757758 = | 0 (0.000) | coding (968/1005 nt) | ldtE | murein L,D‑transpeptidase | |||||
GGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCTT > NC_000913/1757627‑1757893 | cgtctggacaacatggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCAtt > 2:976609‑M2/132‑139 (MQ=255) acaacatggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCt < 1:829268‑M2/15‑1 (MQ=255) aacatggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGa < 1:976609‑M2/17‑1 (MQ=255) acatggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGAc > 1:1598507‑M2/122‑139 (MQ=255) ggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCt > 1:73680‑M2/118‑132 (MQ=255) ggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCt < 2:73680‑M2/15‑1 (MQ=255) accgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCt < 1:1295526‑M2/15‑1 (MQ=255) accgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCt > 2:1295526‑M2/107‑121 (MQ=255) aagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgct > 1:106995‑M2/102‑139 (MQ=255) gtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTgcgc < 1:1514436‑M2/14‑1 (MQ=255) gtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTgcgc > 2:1514436‑M2/100‑113 (MQ=255) tacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCggg < 2:106995‑M2/47‑1 (MQ=255) tgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTgcgc < 1:85774‑M2/14‑1 (MQ=255) tgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTgcgc > 2:85774‑M2/89‑102 (MQ=255) tgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGc > 2:1591134‑M2/87‑139 (MQ=255) tgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatatacccttgctTCACCATTCTgcgc < 1:1203294‑M2/14‑1 (MQ=255) tgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatatacccttgctTCACCATTCTgcgc > 2:1203294‑M2/87‑100 (MQ=255) gaagtgaaaaatggcgcacattgtgcgccatttttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgct > 1:602370‑M2/87‑124 (MQ=255) gaagtgaaaaatggcgcacattgtgcgccatttttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgct < 2:602370‑M2/38‑1 (MQ=255) aaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCt < 2:1624426‑M2/15‑1 (MQ=255) aaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCt > 1:1624426‑M2/80‑94 (MQ=255) aaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTg < 2:1598507‑M2/60‑1 (MQ=255) aaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTg > 2:224828‑M2/80‑139 (MQ=255) aatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgct < 2:1539129‑M2/38‑1 (MQ=255) aatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgct > 1:1539129‑M2/77‑114 (MQ=255) cgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctt < 1:490958‑M2/1‑1 (MQ=255) cgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctt > 2:490958‑M2/72‑72 (MQ=255) attgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCt > 2:1567248‑M2/67‑81 (MQ=255) attgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCt < 1:1567248‑M2/15‑1 (MQ=255) attttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGc > 1:1441622‑M2/57‑139 (MQ=255) tttttcttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTTTGCGCTGACTCTACTGAAGGCGCAGTGCTGGCTGCGGGAGTTGCTCCACTGCTCCCCGAAACCGGATACCCTGcc < 1:1072204‑M2/84‑1 (MQ=255) ctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTgc > 1:1350851‑M2/46‑57 (MQ=255) ctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTgc < 2:1350851‑M2/12‑1 (MQ=255) ctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGgcg < 1:1228977‑M2/31‑1 (MQ=255) ctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGgcg > 2:1228977‑M2/46‑76 (MQ=255) ctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACa > 1:291909‑M2/46‑139 (MQ=255) gccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGgcg > 2:276665‑M2/44‑74 (MQ=255) gccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGgcg < 1:276665‑M2/31‑1 (MQ=255) tttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCtt > 2:137409‑M2/40‑139 (MQ=255) accgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTAt < 1:137409‑M2/103‑1 (MQ=255) gttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGa < 2:291909‑M2/106‑1 (MQ=255) tactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGaa > 2:957352‑M2/32‑100 (MQ=255) tactgcgtcacgcgtaacatattcccttcctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTTCTCCACTGCTCACCGaa < 1:957352‑M2/69‑1 (MQ=255) cgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACtt > 1:923717‑M2/27‑139 (MQ=255) tcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCggg < 2:583504‑M2/47‑1 (MQ=255) tcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCggg > 1:583504‑M2/25‑71 (MQ=255) tcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCt > 2:996151‑M2/25‑139 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGa > 2:1373440‑M2/22‑47 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGa < 1:1373440‑M2/26‑1 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGaa > 2:1292183‑M2/22‑90 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGaa < 1:1292183‑M2/69‑1 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACt < 2:1382017‑M2/108‑1 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACt > 1:1382017‑M2/22‑129 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCt < 1:722111‑M2/115‑1 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCt < 2:861178‑M2/115‑1 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCt > 2:722111‑M2/22‑136 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCt > 1:861178‑M2/22‑136 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGAt > 2:345120‑M2/22‑139 (MQ=255) gcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATc < 2:493020‑M2/119‑1 (MQ=255) aacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGTCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACa > 1:174875‑M2/17‑139 (MQ=255) aacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACa > 1:1411892‑M2/17‑139 (MQ=255) tcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGc > 1:623735‑M2/10‑53 (MQ=255) tcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGc < 2:623735‑M2/44‑1 (MQ=255) tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCt < 1:1571651‑M2/54‑1 (MQ=255) tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCt > 2:1571651‑M2/5‑58 (MQ=255) tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACt > 2:532598‑M2/5‑112 (MQ=255) tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACt < 1:532598‑M2/108‑1 (MQ=255) gctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATc > 2:510790‑M2/4‑122 (MQ=255) gctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATc < 1:510790‑M2/119‑1 (MQ=255) gctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCtt > 2:1607487‑M2/4‑139 (MQ=255) ctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGccc < 2:1578089‑M2/85‑1 (MQ=255) ctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGccc > 1:1578089‑M2/3‑87 (MQ=255) ctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACt > 1:1404937‑M2/3‑110 (MQ=255) ctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACt < 2:1404937‑M2/108‑1 (MQ=255) | GGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCTT > NC_000913/1757627‑1757893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |