| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,439,222 | G→A | P300L (CCA→CTA) | yfcJ ← | putative arabinose efflux transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,439,222 | 0 | G | A | 100.0% | 87.9 / NA | 29 | P300L (CCA→CTA) | yfcJ | putative arabinose efflux transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (15/14); total (15/14) | |||||||||||
CGGCGTAACCGCCCAGTGCGGTGCCGCGAACTTGTGAGGGGACGCGTTTAACCACCTCCACGCCCAGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTGGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACAAGCAGAGAGACAATCGCCACTTTCACGCCGCCAAAACGGTCCGGCATCCAGCCAAACATGACGCGCATCACGACAAATGCGCCGCCA > NC_000913/2439088‑2439347 | cggcgTAACCGCCCAGTGCGGTGCCGCGAACTTGTGAGGGGACGCGTTTAACCACCTCCACGCCCAGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGc > 2:1246842/1‑139 (MQ=255) cgTAACCGCCCAGTGCGGTGCCGCGAACTTGTGAGGGGACGCGTTTAACCACCTCCACGCCCAGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTg > 1:40542/1‑139 (MQ=255) gCGGTGCCGCGAACTTGTGAGGGGACGCGTTTAACCACCTCCACGCCCAGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGcaaca < 1:1246842/139‑1 (MQ=255) cgAACTTGTGAGGGGACGCGTTTAACCACCTCCACGCCCAGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCg > 2:580114/1‑139 (MQ=255) cgAACTTGTGAGGGGACGCGTTTAACCACCTCCACGCCCAGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCg < 2:574335/139‑1 (MQ=255) ccACGCCCAGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGcc < 1:50921/103‑1 (MQ=255) ccACGCCCAGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGcc > 2:50921/1‑103 (MQ=255) gCCCAGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACAAg < 1:1591615/114‑1 (MQ=255) gCCCAGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACAAg > 2:1591615/1‑114 (MQ=255) aGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGc > 1:50710/1‑78 (MQ=255) aGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGc < 2:50710/78‑1 (MQ=255) cgcAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGcc < 2:536864/77‑1 (MQ=255) cgcAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGcc > 1:536864/1‑77 (MQ=255) gcAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACAAGCAGAGAGACAATCGCCACTTTCACGCCGCCaa > 2:872210/1‑139 (MQ=255) gcAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACAAGCAGAGAGACAATCGCCACTTTCACGCCGCCaa < 1:872210/139‑1 (MQ=255) ggAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCa > 2:1173363/1‑74 (MQ=255) ggAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCa < 1:1173363/74‑1 (MQ=255) cGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGcaa < 1:618436/72‑1 (MQ=255) cGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGcaa > 2:618436/1‑72 (MQ=255) cGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACAAGCAGAGAGACAATCGCCACTTTCACGCCGCCAAAACGGTCCGGCATc < 2:301710/139‑1 (MQ=255) tCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGTAACAAGCCCa > 2:266435/1‑68 (MQ=255) tCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGTAACAAGCCCa < 1:266435/68‑1 (MQ=255) gTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACa > 2:419432/1‑75 (MQ=255) gTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACa < 1:419432/75‑1 (MQ=255) cgcgCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACAAGCagagag > 2:1291896/1‑76 (MQ=255) cgcgCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACAAGCagagag < 1:1291896/76‑1 (MQ=255) cgcgCCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACAAGCAGAGAGACAATCGCCACTTTCACGCCGCCAAAACGGTCCGGCATCCAGCCAAACATGACGCGCATCACg > 1:257093/1‑139 (MQ=255) cgcCCGCTAATGCGACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACAAGCAGAGAGACAATCGCCACTTTCACGCCGCCAAAACGGTCCGGCATCCAGCCAAACATGACGCGCATCACGAc > 2:955778/1‑139 (MQ=255) gACCCATGCACCTAGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACAAGCAGAGAGACAATCTCCACTTTCACGCCGCCAAAACGGTCCGGCATCCAGCCAAACATGACGCGCATCTCGACAAATGCGCCGCCa < 1:955778/139‑1 (MQ=255) | CGGCGTAACCGCCCAGTGCGGTGCCGCGAACTTGTGAGGGGACGCGTTTAACCACCTCCACGCCCAGCGCAGGAAAGATAAGCGAACATCCGGCTCCGGTTAACGCCGCGCCCGCTAATGCGACCCATGCACCTGGGGCTTGCCAGAGCAGCAACAAGCCCACCGTTTCTACAAGCAGAGAGACAATCGCCACTTTCACGCCGCCAAAACGGTCCGGCATCCAGCCAAACATGACGCGCATCACGACAAATGCGCCGCCA > NC_000913/2439088‑2439347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |