Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,883,568 T→C T191A (ACA→GCA)  casA ← CRISP RNA (crRNA) containing Cascade antiviral complex protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,883,5680TC100.0% 286.6 / NA 78T191A (ACA→GCA) casACRISP RNA (crRNA) containing Cascade antiviral complex protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (37/41);  total (37/41)

GGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACG  >  NC_000913/2883432‑2883699
                                                                                                                                        |                                                                                                                                   
ggTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGa                                                                                                                                   <  2:451964/139‑1 (MQ=255)
     ccAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              <  2:1181708/139‑1 (MQ=255)
     ccAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACGTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              <  2:889482/139‑1 (MQ=255)
           tAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGt                                                                                                                        >  2:56009/1‑139 (MQ=255)
             gACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGTCTTGATAGGTTTAATCCTGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAATaa                                                                                                                      <  1:1074722/139‑1 (MQ=255)
              aCCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              >  1:657599/1‑130 (MQ=255)
              aCCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              <  2:657599/130‑1 (MQ=255)
              aCCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              <  1:900347/130‑1 (MQ=255)
              aCCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              >  2:900347/1‑130 (MQ=255)
              aCCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAac                                                                                                                     >  2:1425486/1‑139 (MQ=255)
              aCCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAac                                                                                                                     >  2:1668289/1‑139 (MQ=255)
                  cGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGa                                                                                                                                   >  1:192304/1‑121 (MQ=255)
                   ggACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGTGTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCg                                                                                                                 <  2:1034608/138‑1 (MQ=255)
                   ggACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              >  2:1659738/1‑125 (MQ=255)
                   ggACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              <  1:1659738/125‑1 (MQ=255)
                   ggACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCg                                                                                                                 >  1:1034608/1‑138 (MQ=255)
                             aaTTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTTATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAga                                                                                                      >  2:1608935/1‑139 (MQ=255)
                             aaTTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAga                                                                                                      <  2:485422/139‑1 (MQ=255)
                                    gAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATcc                                                                                               <  2:1115216/139‑1 (MQ=255)
                                      aGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCa                                                                                             <  2:1163034/139‑1 (MQ=255)
                                                 aCTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACgt                                                                                  >  2:823881/1‑139 (MQ=255)
                                                 aCTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACgt                                                                                  <  2:910146/139‑1 (MQ=255)
                                                     aTTGGACTTGATAGGTTTTATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACgttgtt                                                                              <  1:1608935/139‑1 (MQ=255)
                                                     aTTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              >  2:225208/1‑91 (MQ=255)
                                                     aTTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              >  2:1239727/1‑91 (MQ=255)
                                                     aTTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              <  1:557055/91‑1 (MQ=255)
                                                     aTTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              >  2:557055/1‑91 (MQ=255)
                                                     aTTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              <  1:1239727/91‑1 (MQ=255)
                                                     aTTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              <  1:225208/91‑1 (MQ=255)
                                                     aTTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAaca                                                                                                                    >  1:36455/1‑101 (MQ=255)
                                                     aTTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAaca                                                                                                                    <  2:36455/101‑1 (MQ=255)
                                                     aTTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGt                                                                                                                <  1:1306093/105‑1 (MQ=255)
                                                     aTTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGt                                                                                                                >  2:1306093/1‑105 (MQ=255)
                                                     aTTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACgttgtt                                                                              <  1:823881/139‑1 (MQ=255)
                                                               aTAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              >  2:1434273/1‑81 (MQ=255)
                                                               aTAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              <  1:1434273/81‑1 (MQ=255)
                                                                   gTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTtcctcc                                                                >  1:1541084/1‑139 (MQ=255)
                                                                      tAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGa                                                                                                                                   <  1:646975/69‑1 (MQ=255)
                                                                        aTCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGt                                                                                                                >  2:685131/1‑86 (MQ=255)
                                                                        aTCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGt                                                                                                                <  1:685131/86‑1 (MQ=255)
                                                                        aTCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTa                                                           >  1:922383/1‑139 (MQ=255)
                                                                            aggtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAAcc                                                       >  2:357481/1‑139 (MQ=255)
                                                                             ggtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              <  1:954957/67‑1 (MQ=255)
                                                                             ggtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              >  2:954957/1‑67 (MQ=255)
                                                                             ggtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCg                                                      >  2:1078768/1‑139 (MQ=255)
                                                                             ggtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCg                                                      <  2:1541084/139‑1 (MQ=255)
                                                                             ggtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCg                                                      <  1:1425486/139‑1 (MQ=255)
                                                                                   ttggttTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAaca                                                                                                                    <  1:585136/71‑1 (MQ=255)
                                                                                   ttggttTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAaca                                                                                                                    >  2:585136/1‑71 (MQ=255)
                                                                                   ttggttTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAgat                                                                                                     <  2:1069659/86‑1 (MQ=255)
                                                                                   ttggttTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAgat                                                                                                     >  1:1069659/1‑86 (MQ=255)
                                                                                      gttTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTtcct                                                                  <  1:489428/118‑1 (MQ=255)
                                                                                      gttTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTtcct                                                                  >  2:489428/1‑118 (MQ=255)
                                                                                            cGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAaccacca                                       <  1:1078768/139‑1 (MQ=255)
                                                                                                tgtgATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGa                                                                                                                                >  2:1172169/1‑46 (MQ=255)
                                                                                                tgtgATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGa                                                                                                                                <  1:1172169/46‑1 (MQ=255)
                                                                                                tgtgATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAAc                                                                                    <  2:1119928/90‑1 (MQ=255)
                                                                                                tgtgATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAAc                                                                                    >  1:1119928/1‑90 (MQ=255)
                                                                                                tgtgATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCaa                                   >  1:1236856/1‑139 (MQ=255)
                                                                                                    aTTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAAcc                               >  2:1217747/1‑139 (MQ=255)
                                                                                                     ttCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAAc                                                                                    <  1:1641637/85‑1 (MQ=255)
                                                                                                     ttCATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAAc                                                                                    >  2:1641637/1‑85 (MQ=255)
                                                                                                       cATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              >  2:537685/1‑41 (MQ=255)
                                                                                                       cATTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACa                                                                                                                              <  1:537685/41‑1 (MQ=255)
                                                                                                        aTTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACg                                                                                                          <  2:1352096/60‑1 (MQ=255)
                                                                                                        aTTAGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACg                                                                                                          >  1:1352096/1‑60 (MQ=255)
                                                                                                           aGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTtcct                                                                  <  1:61112/97‑1 (MQ=255)
                                                                                                           aGGAAATTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTtcct                                                                  >  2:61112/1‑97 (MQ=255)
                                                                                                               aaTTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAAccaccacca                                    >  2:1288307/1‑123 (MQ=255)
                                                                                                               aaTTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAAccaccacca                                    <  1:1288307/123‑1 (MQ=255)
                                                                                                                aTTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGAtt                   >  2:458718/1‑139 (MQ=255)
                                                                                                                aTTGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGAtt                   >  1:464305/1‑139 (MQ=255)
                                                                                                                  tGTTTTTGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCg                 <  1:1668289/139‑1 (MQ=255)
                                                                                                                    tttttGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGcc               <  1:1362200/139‑1 (MQ=255)
                                                                                                                      tttGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTg                             <  1:1408576/123‑1 (MQ=255)
                                                                                                                      tttGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTg                             >  2:1408576/1‑123 (MQ=255)
                                                                                                                       ttGAAGACGAGGTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTgg            <  1:458718/139‑1 (MQ=255)
                                                                                                                                 ggTAATGCGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACg  <  1:1217747/139‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                   
GGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACG  >  NC_000913/2883432‑2883699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑