Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,922,931 (A)7→8 intergenic (‑491/+126) atpI ← / ← rsmG ATP synthase, membrane‑bound accessory factor/16S rRNA m(7)G527 methyltransferase, SAM‑dependent, glucose‑inhibited cell‑division protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,922,9241.A100.0% 155.6 / NA 48intergenic (‑484/+133)atpI/rsmGATP synthase, membrane‑bound accessory factor/16S rRNA m(7)G527 methyltransferase, SAM‑dependent, glucose‑inhibited cell‑division protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base A (22/26);  total (22/26)

TACACAACAAAAACCACCCATTGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGGTTGTTGTTAACAGTCTAACCGGTCAATTTTTTAT  >  NC_000913/3922808‑3923039
                                                                                                                     |                                                                                                                   
tACACAACAAAAACCACCCATTGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttg                                                                                                >  2:797072/1‑139 (MQ=255)
 acacAACAAAAACCACCCATTGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttgt                                                                                               <  1:217813/139‑1 (MQ=255)
   acaacaAAAACCACCCATTGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttgttg                                                                                             >  2:956308/1‑139 (MQ=255)
                 ccATTGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGa                                                                               >  1:828762/1‑139 (MQ=255)
                    ttGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACg                                                                            <  1:797072/139‑1 (MQ=255)
                               aataatGTTTTGACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCTCGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAAt                                                                 <  2:790858/139‑1 (MQ=255)
                                   atGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTAt                                                                                                    <  2:624026/100‑1 (MQ=255)
                                   atGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTAt                                                                                                    >  1:624026/1‑100 (MQ=255)
                                   atGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTaa                                                             <  1:550928/139‑1 (MQ=255)
                                     gTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAAcc                                                           >  2:277721/1‑139 (MQ=255)
                                      ttttAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCa                                                          >  2:1104396/1‑139 (MQ=255)
                                             aGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTatat                                                   <  1:277721/139‑1 (MQ=255)
                                              gCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTTATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTa                                                              <  2:750764/127‑1 (MQ=255)
                                              gCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGt                                                                      >  1:415715/1‑119 (MQ=255)
                                              gCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGt                                                                      <  2:415715/119‑1 (MQ=255)
                                              gCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTa                                                              >  1:750764/1‑127 (MQ=255)
                                                cAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGt                                                                           >  2:499625/1‑112 (MQ=255)
                                                cAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGt                                                                           <  1:499625/112‑1 (MQ=255)
                                                cAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTatat                                                   >  1:1039693/1‑136 (MQ=255)
                                                cAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTatat                                                   <  2:1039693/136‑1 (MQ=255)
                                                 aaTGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttgt                                                                                               >  2:587602/1‑91 (MQ=255)
                                                 aaTGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttgt                                                                                               <  1:587602/91‑1 (MQ=255)
                                                  atgatgGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTa                                              <  2:187040/139‑1 (MQ=255)
                                                            ttAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTgg                                    <  1:946202/139‑1 (MQ=255)
                                                            ttAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTgg                                    <  1:956308/139‑1 (MQ=255)
                                                              aGCGCCGATTTTTAGCTGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTCgtt                                  <  2:828762/139‑1 (MQ=255)
                                                              aGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGa                                                                                            <  1:882679/81‑1 (MQ=255)
                                                              aGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGa                                                                                            >  2:882679/1‑81 (MQ=255)
                                                              aGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCa                                                                                        <  1:12347/85‑1 (MQ=255)
                                                              aGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCa                                                                                        >  2:12347/1‑85 (MQ=255)
                                                              aGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGCAGAAAACCTGgtt                                  >  2:673244/1‑139 (MQ=255)
                                                                cgcCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGt                                                               <  2:1087073/108‑1 (MQ=255)
                                                                cgcCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGt                                                               >  1:1087073/1‑108 (MQ=255)
                                                                   cGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGgttgttgt                             >  1:495819/1‑139 (MQ=255)
                                                                    gATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGCAGAAAACCTGgttgttgtt                            <  1:673244/139‑1 (MQ=255)
                                                                      tttttAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGGTTGTTGTTaa                          <  2:495819/139‑1 (MQ=255)
                                                                              aGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGGTTGTTGTTAACAGTCTaa                  <  1:173707/139‑1 (MQ=255)
                                                                               gACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttgttg                                                                                             >  1:903122/1‑63 (MQ=255)
                                                                               gACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttgttg                                                                                             <  2:903122/63‑1 (MQ=255)
                                                                                          tCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTaa                                                             <  2:1078533/84‑1 (MQ=255)
                                                                                          tCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTaa                                                             >  1:1078533/1‑84 (MQ=255)
                                                                                              tAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGGTTGTTGTTAACAGTCTAACCGGTCAATTTTTTAt  >  1:1216126/1‑139 (MQ=255)
                                                                                                       aTTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTa                                                              >  2:979040/1‑70 (MQ=255)
                                                                                                       aTTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTa                                                              <  1:979040/70‑1 (MQ=255)
                                                                                                            cTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGgttgttgtt                            <  2:769212/99‑1 (MQ=255)
                                                                                                            cTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGgttgttgtt                            >  1:769212/1‑99 (MQ=255)
                                                                                                               cTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGt                                                                      <  2:165863/54‑1 (MQ=255)
                                                                                                               cTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGt                                                                      >  1:165863/1‑54 (MQ=255)
                                                                                                                     |                                                                                                                   
TACACAACAAAAACCACCCATTGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGGTTGTTGTTAACAGTCTAACCGGTCAATTTTTTAT  >  NC_000913/3922808‑3923039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: