Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,475,562 (G)6→7 coding (126/1815 nt) yjgL → SopA‑central‑domain‑like hexapeptide repeat protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,475,5561.G100.0% 137.8 / NA 39A40A (GCC→GCG) yjgLSopA‑central‑domain‑like hexapeptide repeat protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (20/19);  total (20/19)

TTCACTCAAGGAGTTCGTCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCC‑‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCAT  >  NC_000913/4475418‑4475688
                                                                                                                                           |                                                                                                                                     
ttCACTCAAGGAGTTCGTCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGcc                                                                                                                                        <  2:414108/139‑1 (MQ=255)
       aaGGAGTTCGTCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCC‑‑ggggggg                                                                                                                               <  2:298811/139‑2 (MQ=255)
            gtgcGTCATGAGCAAAATATCAGATTTAAATTATTCGCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGa                                                                                                                           <  2:1157327/136‑1 (MQ=255)
                  cATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAg                                                                                                                     <  2:892176/139‑1 (MQ=255)
                         aaaaTATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAat                                                                                                              <  2:1161612/139‑1 (MQ=255)
                         aaaaTATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAat                                                                                                              <  2:25555/139‑1 (MQ=255)
                          aaaTATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGGGCAGGATAACAGAAGGAat                                                                                                              >  2:582075/1‑139 (MQ=255)
                                       aaaTTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTtcctcc                                                                                                   <  2:1102531/136‑1 (MQ=255)
                                       aaaTTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTtcctcc                                                                                                   >  1:1102531/1‑136 (MQ=255)
                                         attattCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAg                                                                                              <  1:1183645/139‑1 (MQ=255)
                                                  aaCACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCAttttt                                                                                       >  1:384734/1‑137 (MQ=255)
                                                  aaCACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCAttttt                                                                                       <  2:384734/137‑1 (MQ=255)
                                                       attacattaGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGttt                                                                                >  1:1201148/1‑139 (MQ=255)
                                                              taGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGAt                                                                                                                          >  2:982744/1‑90 (MQ=255)
                                                              taGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGAt                                                                                                                          <  1:982744/90‑1 (MQ=255)
                                                                 ccGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATAttct                                                                                                         >  2:920923/1‑104 (MQ=255)
                                                                 ccGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCa                                                                          >  1:552810/1‑135 (MQ=255)
                                                                 ccGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCa                                                                          <  2:552810/135‑1 (MQ=255)
                                                                 ccGAAAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATAttct                                                                                                         <  1:920923/104‑1 (MQ=255)
                                                                     cAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATAtt                                                                  >  2:850790/1‑139 (MQ=255)
                                                                      aaTTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATAttt                                                                 >  1:1125742/1‑139 (MQ=255)
                                                                      aaTTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCC‑‑ggggggg                                                                                                                               >  1:688708/1‑75 (MQ=255)
                                                                      aaTTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCC‑‑ggggggg                                                                                                                               <  2:688708/76‑2 (MQ=255)
                                                                                                      cTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTc                                 >  1:837568/1‑139 (MQ=255)
                                                                                                        ggCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATAtt                                                                  <  1:662922/104‑1 (MQ=255)
                                                                                                        ggCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATAtt                                                                  >  2:662922/1‑104 (MQ=255)
                                                                                                        ggCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCaaa                                      >  1:909193/1‑132 (MQ=255)
                                                                                                        ggCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCaaa                                      <  2:909193/132‑1 (MQ=255)
                                                                                                        ggCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCa                               >  2:1021599/1‑139 (MQ=255)
                                                                                                         gCGTGTTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCaa                              >  2:144879/1‑139 (MQ=255)
                                                                                                             gtTGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGaa                          >  1:529616/1‑139 (MQ=255)
                                                                                                              ttGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCa                                                                          <  1:270398/90‑1 (MQ=255)
                                                                                                              ttGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCa                                                                          >  2:270398/1‑90 (MQ=255)
                                                                                                              ttGGAATGAATGATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAg                         >  1:585802/1‑139 (MQ=255)
                                                                                                                  aatgaatgATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCggg                     <  1:144879/139‑1 (MQ=255)
                                                                                                                  aatgaatgATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCggg                     <  1:64927/139‑1 (MQ=255)
                                                                                                                  aatgaatgATTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCggg                     <  1:850790/139‑1 (MQ=255)
                                                                                                                       atgaTTTTGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGaa                <  2:1125742/139‑1 (MQ=255)
                                                                                                                            tttGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCa                                        <  2:565883/110‑1 (MQ=255)
                                                                                                                            tttGCCCGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCa                                        >  1:565883/1‑110 (MQ=255)
                                                                                                                                cccGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATgg       <  2:529616/139‑1 (MQ=255)
                                                                                                                                cccGTATTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATgg       >  2:1158194/1‑139 (MQ=255)
                                                                                                                                     aTTGCCG‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCat  >  2:367310/1‑139 (MQ=255)
                                                                                                                                           |                                                                                                                                     
TTCACTCAAGGAGTTCGTCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCC‑‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCAT  >  NC_000913/4475418‑4475688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑