New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1286708 =	33 (0.620)	7 (0.160)	6/176	3.4	23.9%	intergenic (+182/+358)	narI/rttR	nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript
	?	NC_000913	= 1287241	18 (0.420)					intergenic (‑5/+3)	rttR/tyrV	rtT sRNA, processed from tyrT transcript/tRNA‑Tyr
Rejected: Coverage evenness skew score above cutoff.

TGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCG‑TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGATGGTGGTGG  >  NC_000913/1287122‑1287371                                                                                                                         |                                                                                                                                   tGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCG‑TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                                                                 <  2:788400/139‑1 (MQ=11)                                              aGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCG‑TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                                                                                                      <  1:978337/89‑1 (MQ=255)                                              aGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCG‑TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTggggg                                                                                                                      >  2:978337/1‑89 (MQ=255)                                                           tCCCCGCATGGGCAGAATATTTAATTGCGGATTCG‑TTGGGAAGTTCAGGGACTTTTGAAAGTGAtggtggt                                                                                                                           >  2:1052766/1‑71 (MQ=255)                                                           tCCCCGCATGGGCAGAATATTTAATTGCGGATTCG‑TTGGGAAGTTCAGGGACTTTTGAAAGTGAtggtggt                                                                                                                           <  1:1052766/71‑1 (MQ=255)                                                             cccGCATGGGCAGAATATTTGATTGCGGATTCG‑CTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGc                                                              <  1:642578/130‑1 (MQ=18)                                                             cccGCATGGGCAGAATATTTGATTGCGGATTCG‑CTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGc                                                              >  2:642578/1‑130 (MQ=18)                                                             cccGCATGGGCAGAATATTTGATTGCGGATTCG‑CTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGa                                                     <  1:437200/139‑1 (MQ=18)                                                             cccGCATGGGCAGAATATTTGATTGCGGATTCG‑CTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGa                                                     >  2:1059789/1‑139 (MQ=18)                                                             cccGCATGGGCAGAATATTTGATTGCGGATTCG‑CTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGa                                                     >  2:437200/1‑139 (MQ=18)                                                                  aTGGGCAGAATATTTGATTGCGGATTCG‑CTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTg                                                                         >  1:760977/1‑114 (MQ=17)                                                                  aTGGGCAGAATATTTGATTGCGGATTCG‑CTTGAGAGTTCAGGGACTCTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTg                                                                         <  2:760977/114‑1 (MQ=17)                                                                     ggCAGAATATTTGATTGCGGATTCGCTTGAG‑AGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCccacc                                             >  2:566345/1‑139 (MQ=18)                                                                     ggCAGAATATTTGATTGCGGATTCG‑CTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCccacc                                             <  1:566345/139‑1 (MQ=18)                                                                        aGAATATTTGATTGCGGATTCG‑CTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCCTTGGCCGCTCGGGAACCCCACCAgg                                          >  2:510750/1‑139 (MQ=18)                                                                               ttAATTGCGGATTCG‑TTGGGAAGTTCAGGGACTTTTGAAAGTGAtggtgg                                                                                                                            >  2:884615/1‑50 (MQ=255)                                                                               ttAATTGCGGATTCG‑TTGGGAAGTTCAGGGACTTTTGAAAGTGAtggtgg                                                                                                                            <  1:884615/50‑1 (MQ=255)                                                                                tgaTTGCGGATTCG‑CTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTc                                  <  2:60224/137‑1 (MQ=18)                                                                                      cGGATTCGCTTGAG‑AGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAAttt                            >  1:362804/1‑139 (MQ=18)                                                                                            tcgcttgagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCCTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAgg                       <  1:510750/130‑1 (MQ=255)                                                                                             cgcttgagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGt                      <  1:596242/131‑1 (MQ=255)                                                                                               cttgagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTaa                    <  1:1059789/133‑1 (MQ=255)                                                                                                                 tttGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTc                                  <  2:1012589/107‑1 (MQ=255)                                                                                                                 tttGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTc                                  >  1:1012589/1‑107 (MQ=255)                                                                                                                 tttGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGAtggtggtgg  >  1:1166823/1‑139 (MQ=255)                                                                                                                         |                                                                                                                                   TGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCG‑TTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTAATTCAAATTTTGAGGTAATGCTTGAGATGGTGGTGG  >  NC_000913/1287122‑1287371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.