Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,652,273	T→C	pseudogene (723/1158 nt)	intQ →	pseudogene, Qin prophage, phage integrase family,Phage or Prophage Related

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,652,273	0	T	C	100.0%	254.4 / NA	72	pseudogene (723/1158 nt)	intQ	pseudogene, Qin prophage, phage integrase family,Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (36/36);  total (36/36)

GATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGT  >  NC_000913/1652140‑1652401                                                                                                                                      |                                                                                                                                 gATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCg                                                                                                                             >  1:92663/1‑139 (MQ=255) gATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCg                                                                                                                             >  2:206784/1‑139 (MQ=255)      gaggaCATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTc                                                                                                                        >  1:777142/1‑139 (MQ=255)      gaggaCATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTc                                                                                                                        >  2:1193770/1‑139 (MQ=255)      gaggaCATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTc                                                                                                                        >  2:309723/1‑139 (MQ=255)           cATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATg                                                                                                                   <  2:168953/139‑1 (MQ=255)             tAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGAc                                                                                                                 <  1:883567/139‑1 (MQ=255)             tAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGAc                                                                                                                 <  1:1193770/139‑1 (MQ=255)                aTCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACAtt                                                                                                              >  1:248455/1‑139 (MQ=255)                     aaaaaTGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACga                                                                                                         >  1:511920/1‑139 (MQ=255)                          tGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTg                                                                                                    >  1:87003/1‑139 (MQ=255)                              aCAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCa                                                                                                <  2:615018/139‑1 (MQ=255)                              aCAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCa                                                                                                <  2:1042191/139‑1 (MQ=255)                                aaTGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCaaa                                                                                              <  2:92663/139‑1 (MQ=255)                                 atgatgATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAag                                                                                             <  1:33110/139‑1 (MQ=255)                                   gatgatCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAagag                                                                                           <  2:511920/139‑1 (MQ=255)                                     tgatCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCa                                                                                         <  2:87003/139‑1 (MQ=255)                                       atCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACGAAAGGGGCCACGCAACTTATTAAGCCCGCTATCGTCGCCCTTTGGAGTCAGACGACATTAAAGAGATTGAGAAAAGAGCata                                                                                       >  1:615018/1‑139 (MQ=255)                                       atCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCata                                                                                       >  2:210544/1‑139 (MQ=255)                                          aGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGAt                                                                                                                    >  1:508690/1‑107 (MQ=255)                                          aGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGAt                                                                                                                    <  2:508690/107‑1 (MQ=255)                                          aGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCa                                                                                    <  2:248455/139‑1 (MQ=255)                                            gagaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGccct                                                                                                                                >  1:195885/1‑93 (MQ=255)                                            gagaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCTTCCGGAGTCAGATGAAATTAACGACGATAAGAAAAGAGCAAATCAtt                                                                                  >  2:889147/1‑139 (MQ=255)                                            gagaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTaa                                                                                                            <  2:1086859/113‑1 (MQ=255)                                            gagaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTaa                                                                                                            >  1:1086859/1‑113 (MQ=255)                                            gagaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAACAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCAtt                                                                                  >  1:157437/1‑139 (MQ=255)                                                 aTTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGt                                                                             >  1:538754/1‑139 (MQ=255)                                                 aTTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGt                                                                             >  1:77970/1‑139 (MQ=255)                                                      gCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAATAGCATATCATTGATGtt                                                                            <  2:763168/135‑1 (MQ=255)                                                      gCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGtt                                                                            >  1:763168/1‑135 (MQ=255)                                                      gCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACt                                                                        <  2:77970/139‑1 (MQ=255)                                                         aaaGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCa                                                                     <  2:777142/139‑1 (MQ=255)                                                         aaaGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCa                                                                     <  2:632999/139‑1 (MQ=255)                                                         aaaGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCa                                                                     <  1:309723/139‑1 (MQ=255)                                                           aGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCaga                                                                   <  1:436359/139‑1 (MQ=255)                                                           aGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCaga                                                                   <  1:206784/139‑1 (MQ=255)                                                                 tttCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCa                                                                     >  1:715232/1‑131 (MQ=255)                                                                 tttCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCa                                                                     <  2:715232/131‑1 (MQ=255)                                                                       ggTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcaga                                                       >  1:686975/1‑139 (MQ=255)                                                                           ccAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACg                                                                                                          >  1:766655/1‑84 (MQ=255)                                                                           ccAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACg                                                                                                          <  2:766655/84‑1 (MQ=255)                                                                            cAAAAACACAGGCGGGAACCCATCGGGTCATTCAGCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCATATGACATTAACGACTCTGAGCAAAGAGCATCTCATTGATGTTCACTTCACAGAGTATGGcagaccaga                                                  >  1:210566/1‑139 (MQ=255)                                                                            cAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcagaacaga                                                  >  2:12365/1‑139 (MQ=255)                                                                            cAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcagaacaga                                                  >  2:390623/1‑139 (MQ=255)                                                                            cAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcagaacaga                                                  <  2:989760/139‑1 (MQ=255)                                                                             aaaaaCACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcagaacagaa                                                 <  2:686975/139‑1 (MQ=255)                                                                                     aGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGt                                                                             <  2:370829/103‑1 (MQ=255)                                                                                     aGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGt                                                                             >  1:370829/1‑103 (MQ=255)                                                                                     aGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGAAATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACaaaa                                         >  2:260076/1‑139 (MQ=255)                                                                                               cAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCttt                               <  1:103682/139‑1 (MQ=255)                                                                                                 aTCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACt                                                                                                     >  2:88245/1‑67 (MQ=255)                                                                                                 aTCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACt                                                                                                     <  1:88245/67‑1 (MQ=255)                                                                                                    gggTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGtttt                          <  1:12365/139‑1 (MQ=255)                                                                                                      gTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGAt                                                                               <  1:182919/84‑1 (MQ=255)                                                                                                      gTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGAt                                                                               >  2:182919/1‑84 (MQ=255)                                                                                                      gTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTc                        <  1:210544/139‑1 (MQ=255)                                                                                                         attcatCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGc                                                                                                 >  2:726971/1‑63 (MQ=255)                                                                                                         attcatCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGc                                                                                                 <  1:392773/63‑1 (MQ=255)                                                                                                         attcatCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGc                                                                                                 >  2:392773/1‑63 (MQ=255)                                                                                                         attcatCTTATTAAGCCAGCAATCGACGCCCTCCGCAGTCAGATGACATTAACGAGACTGAGc                                                                                                 <  1:726971/63‑1 (MQ=255)                                                                                                          ttcatCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAcc                    <  2:538754/139‑1 (MQ=255)                                                                                                            catCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTg                  <  1:390623/139‑1 (MQ=255)                                                                                                                   ttaAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTc           >  2:45988/1‑139 (MQ=255)                                                                                                                     aaGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAagag                                                                                           <  1:95560/57‑1 (MQ=255)                                                                                                                     aaGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAagag                                                                                           >  2:95560/1‑57 (MQ=255)                                                                                                                     aaGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAc                     <  1:275681/127‑1 (MQ=255)                                                                                                                     aaGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAc                     >  2:275681/1‑127 (MQ=255)                                                                                                                         cAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCgag     >  2:731717/1‑139 (MQ=255)                                                                                                                            cAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGt  >  2:897317/1‑139 (MQ=255)                                                                                                                            cAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGt  >  1:76366/1‑139 (MQ=255)                                                                                                                             aaTCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCttt                               >  1:252947/1‑109 (MQ=255)                                                                                                                             aaTCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCttt                               <  2:252947/109‑1 (MQ=255)                                                                                                                                      |                                                                                                                                 GATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGT  >  NC_000913/1652140‑1652401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑