| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,672,863 | A→G | L96P (CTG→CCG) | mdtI ← | multidrug efflux system transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,672,863 | 0 | A | G | 100.0% | 114.2 / NA | 32 | L96P (CTG→CCG) | mdtI | multidrug efflux system transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (17/15); total (17/15) | |||||||||||
TTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCCCACAATGCATAAGCGACAGACAAGTCGATCCCTTTAACGGCTTGAGAA > NC_000913/1672732‑1672994 | tttCTGTTACCTGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAAAAACGTTCAAACGCTGCCCAACAGCGCGGGCCGCGTCTTCATCAGGCAAGTTTCCCCATGATCATTCCAGCCAACAGCAAGACCGGGCCAAt < 1:952022/139‑1 (MQ=255) aCTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAAc < 2:239850/136‑1 (MQ=255) aCTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAAc > 1:239850/1‑136 (MQ=255) cTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGc > 1:949117/1‑100 (MQ=255) cTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGc < 2:949117/100‑1 (MQ=255) gCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCaa > 1:110268/1‑139 (MQ=255) ttCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCtt > 1:412651/1‑95 (MQ=255) ttCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCtt < 2:412651/95‑1 (MQ=255) cAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGt > 2:918494/1‑139 (MQ=255) aaaCGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTg < 2:110268/139‑1 (MQ=255) cTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTggcggc < 1:918494/139‑1 (MQ=255) gCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCtt < 2:1174137/85‑1 (MQ=255) gCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCtt > 1:1174137/1‑85 (MQ=255) gCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCaa > 1:1059677/1‑139 (MQ=255) cccGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTggcggc > 2:477545/1‑136 (MQ=255) cccGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTggcggc < 1:477545/136‑1 (MQ=255) cgcgGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAAcc > 2:60040/1‑139 (MQ=255) tttCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAAcc > 1:19270/1‑84 (MQ=255) tttCACCATGATCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAAcc < 2:19270/84‑1 (MQ=255) aTCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGAc > 2:516511/1‑58 (MQ=255) aTCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGAc < 1:516511/58‑1 (MQ=255) aTCATTCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCCCACAATGCATAAGCGACAGACAAGTCGATcc > 1:617682/1‑139 (MQ=255) ttCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAAc > 2:1047734/1‑69 (MQ=255) ttCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAAc < 1:1047734/69‑1 (MQ=255) ttCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCaa > 1:911832/1‑96 (MQ=255) ttCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCaa < 2:911832/96‑1 (MQ=255) ttCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCCCACAATGCATAAGCgacaga > 2:255829/1‑124 (MQ=255) ttCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCCCACAATGCATAAGCgacaga < 1:255829/124‑1 (MQ=255) ttCCAGCCAACAGCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCCCACAATGCATAAGCGACAGACAAGTCGATCCCttt < 1:60040/139‑1 (MQ=255) gCCAACAGCAAGACCGGGCAAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCAGCTAACGTGGCGGCAATACCAAACCCGCCCCACAATGCATAAGCGACAGACAAGTCGATCCCTTTAACgg > 1:915591/1‑139 (MQ=255) gCAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCCCACAATGCATAAGCGACAGACAAGTCGATCCCTTTAACGGCTTgaga < 2:1059677/139‑1 (MQ=255) cAAGACCGGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCCCACAATGCATAAGCGACAGACAAGTCGATCCCTTTAACGGCTTGAGaa > 1:470111/1‑139 (MQ=255) | TTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCCCACAATGCATAAGCGACAGACAAGTCGATCCCTTTAACGGCTTGAGAA > NC_000913/1672732‑1672994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |