| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,757,753 | Δ5 bp | coding (969‑973/1005 nt) | ldtE ← | murein L,D‑transpeptidase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1757753 | 1757757 | 5 | 77 [0] | [0] 76 | ldtE | murein L,D‑transpeptidase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1757752 | 0 (0.000) | 76 (1.020) | 52/206 | 0.2 | 100% | coding (974/1005 nt) | ldtE | murein L,D‑transpeptidase |
| ? | NC_000913 | 1757758 = | 0 (0.000) | coding (968/1005 nt) | ldtE | murein L,D‑transpeptidase | |||||
AACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCTT > NC_000913/1757631‑1757893 | tggacaacatggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTgc < 2:1828103‑M2/12‑1 (MQ=255) acaacatggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCt < 1:1309198‑M2/15‑1 (MQ=255) acatggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGAc > 1:538035‑M2/122‑139 (MQ=255) ggctactaaataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTa > 1:251581‑M2/118‑139 (MQ=255) aataccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGgc > 2:444958‑M2/110‑139 (MQ=255) taccgcaagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGgcgc > 2:1785945‑M2/108‑139 (MQ=255) caagtaatagtacctgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgc > 2:1122546‑M2/103‑139 (MQ=255) tgtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGtt > 2:680979‑M2/89‑139 (MQ=255) gtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCAtt > 2:592075‑M2/88‑95 (MQ=255) gtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCAtt < 1:592075‑M2/8‑1 (MQ=255) gtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCggg > 2:1685496‑M2/88‑134 (MQ=255) gtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCggg < 1:1685496‑M2/47‑1 (MQ=255) gtgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTg > 1:693939‑M2/88‑139 (MQ=255) tgaagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGc > 1:131172‑M2/87‑139 (MQ=255) aagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGt > 1:1394197‑M2/85‑134 (MQ=255) aagtgaaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGt < 2:1394197‑M2/50‑1 (MQ=255) aaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCggg < 2:1808288‑M2/47‑1 (MQ=255) aaaaatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCggg > 1:1808288‑M2/80‑126 (MQ=255) aatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTgcgc > 2:1274952‑M2/77‑90 (MQ=255) aatggcgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTgcgc < 1:1274952‑M2/14‑1 (MQ=255) cgcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGa > 1:1055231‑M2/72‑139 (MQ=255) gcacattgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGaa < 2:131172‑M2/69‑1 (MQ=255) tgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGaa > 1:1665998‑M2/65‑133 (MQ=255) tgtgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGaa < 2:1665998‑M2/69‑1 (MQ=255) tgcgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATa > 1:682604‑M2/63‑139 (MQ=255) cgccattttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATAcc < 1:680979‑M2/79‑1 (MQ=255) attttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGc > 1:1622142‑M2/57‑139 (MQ=255) tttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGccc < 1:444958‑M2/85‑1 (MQ=255) tttttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGccc > 2:1720904‑M2/55‑139 (MQ=255) tttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCAtt > 1:188894‑M2/53‑60 (MQ=255) tttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCAtt < 2:188894‑M2/8‑1 (MQ=255) tttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCa > 1:1159975‑M2/53‑109 (MQ=255) tttttgtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCa < 2:1159975‑M2/57‑1 (MQ=255) gtctgccgtttaccgttactgcgtcacgcgtaacatattcccttgcnTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATa < 2:1491169‑M2/92‑1 (MQ=255) tgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCAc < 1:1732733‑M2/65‑1 (MQ=255) tgccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCAc > 2:1732733‑M2/45‑109 (MQ=255) ccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGaa < 2:19145‑M2/69‑1 (MQ=255) ccgtttaccgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGaa > 1:19145‑M2/43‑111 (MQ=255) accgttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTTCCCGACGATACAACGCTTTAt < 1:1122546‑M2/103‑1 (MQ=255) gttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGa < 2:251581‑M2/106‑1 (MQ=255) ttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGcc < 2:421216‑M2/84‑1 (MQ=255) ttactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGcc > 1:421216‑M2/33‑116 (MQ=255) tactgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACt < 2:682604‑M2/108‑1 (MQ=255) tgcgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAAc < 1:1720904‑M2/111‑1 (MQ=255) cgtcacgcgtaacatattcccttgctTCACCATTCTgc < 1:1165716‑M2/12‑1 (MQ=255) cgtcacgcgtaacatattcccttgctTCACCATTCTgc > 2:1165716‑M2/27‑38 (MQ=255) cgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCggg > 2:568144‑M2/27‑73 (MQ=255) cgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCggg < 1:568144‑M2/47‑1 (MQ=255) cgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAAc > 1:82849‑M2/27‑122 (MQ=255) cgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAAc < 2:82849‑M2/96‑1 (MQ=255) cgtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACtt > 1:73526‑M2/27‑139 (MQ=255) gtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACCGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACtt > 1:1323186‑M2/26‑138 (MQ=255) gtcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACCGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACtt < 2:1323186‑M2/113‑1 (MQ=255) tcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCg < 2:1055826‑M2/67‑1 (MQ=255) tcacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCg > 1:1055826‑M2/25‑91 (MQ=255) cacgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTg < 2:693939‑M2/116‑1 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATa > 2:903978‑M2/22‑113 (MQ=255) cgcgtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATa < 1:903978‑M2/92‑1 (MQ=255) gtaacatattcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTa < 2:392335‑M2/121‑1 (MQ=255) ttcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgctggctg > 2:1539318‑M2/11‑53 (MQ=255) ttcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTgctggctg < 1:1539318‑M2/43‑1 (MQ=255) tcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACt < 1:288235‑M2/108‑1 (MQ=255) tcccttgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACt > 2:288235‑M2/10‑117 (MQ=255) tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCa > 2:953553‑M2/5‑61 (MQ=255) tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCa < 1:953553‑M2/57‑1 (MQ=255) tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCg > 2:1187996‑M2/5‑71 (MQ=255) tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCg < 1:1187996‑M2/67‑1 (MQ=255) tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTAt < 1:920978‑M2/103‑1 (MQ=255) tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTAt > 2:920978‑M2/5‑107 (MQ=255) tgctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCt > 1:863281‑M2/5‑139 (MQ=255) gctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCtt > 1:1019631‑M2/4‑139 (MQ=255) gctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCtt > 2:994232‑M2/4‑139 (MQ=255) ctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATa < 2:655668‑M2/92‑1 (MQ=255) ctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATa > 1:655668‑M2/3‑94 (MQ=255) ctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTAt > 2:1377376‑M2/3‑132 (MQ=255) ctTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTAt < 1:1377376‑M2/130‑1 (MQ=255) | AACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATTGTCTT > NC_000913/1757631‑1757893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |