| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,862,524 | Δ3 bp | pseudogene (1078‑1080/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3862523 | 4 (0.050) | 73 (0.970) | 47/208 | 0.3 | 94.8% | pseudogene (1081/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| ? | NC_000913 | 3862527 = | 4 (0.050) | pseudogene (1077/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component | |||||
GGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTT > NC_000913/3862391‑3862656 | gtgcggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcac > 1:162854‑M2/137‑139 (MQ=255) tgcggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcacc < 2:972112‑M2/4‑1 (MQ=255) gaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac < 1:981669‑M2/8‑1 (MQ=255) gaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac < 2:162854‑M2/8‑1 (MQ=255) gaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac < 1:1469232‑M2/8‑1 (MQ=255) aaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacacc < 1:31537‑M2/9‑1 (MQ=255) aaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacacca < 2:599743‑M2/10‑1 (MQ=255) aaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacacca < 2:1593389‑M2/10‑1 (MQ=255) accacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCaaa < 1:186809‑M2/12‑1 (MQ=255) agtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctggacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATAc > 1:1281449‑M2/121‑139 (MQ=255) taaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTc > 2:49938‑M2/109‑136 (MQ=255) taaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTc < 1:49938‑M2/28‑1 (MQ=255) aacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAg > 2:1349570‑M2/101‑137 (MQ=255) aacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGgc > 2:96017‑M2/101‑139 (MQ=255) aacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagatttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAg < 1:1349570‑M2/37‑1 (MQ=255) cccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac < 2:1065183‑M2/8‑1 (MQ=255) cccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac > 1:1065183‑M2/99‑106 (MQ=255) cccaatggcgatttgggtcaacatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGgccg > 1:735347‑M2/99‑139 (MQ=255) tggggatttggctcagcatcatatcggcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATAGATTACGGTCGACATTGAGGCCGCCAGc < 2:1216240‑M2/46‑1 (MQ=255) tggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGc < 2:1281449‑M2/46‑1 (MQ=255) atttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGc > 1:1005015‑M2/89‑139 (MQ=255) atttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGc > 2:790121‑M2/89‑139 (MQ=255) atttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGc > 1:443736‑M2/89‑139 (MQ=255) ttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCgt < 1:798851‑M2/53‑1 (MQ=255) catcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGt < 2:554681‑M2/27‑1 (MQ=255) catcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGt > 1:554681‑M2/78‑104 (MQ=255) tatccgcgtggttgctgaacatcgggatccagttttgcggtaacacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGc > 1:1494041‑M2/73‑139 (MQ=255) tatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAgaga > 2:1606401‑M2/73‑88 (MQ=255) tatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAgaga < 1:1606401‑M2/16‑1 (MQ=255) ccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACAtt > 1:1058140‑M2/70‑91 (MQ=255) ccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACAtt < 2:1058140‑M2/22‑1 (MQ=255) cgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac < 1:284428‑M2/8‑1 (MQ=255) cgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac > 2:284428‑M2/69‑76 (MQ=255) gcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGc < 1:563358‑M2/46‑1 (MQ=255) gcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGc > 2:563358‑M2/68‑113 (MQ=255) gcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTAAGGCCGCCAGAACGGCGTGTACCGCAAACAGCAACgg > 1:1197308‑M2/68‑139 (MQ=255) cgtggttgctgagcatcgggatccagttttgcggcaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATCGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCCACGGt > 1:719765‑M2/67‑139 (MQ=255) cgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGt > 2:1081765‑M2/67‑139 (MQ=255) tggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACg > 1:1119763‑M2/65‑135 (MQ=255) tggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACg < 2:1119763‑M2/71‑1 (MQ=255) gttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGc < 2:1853818‑M2/46‑1 (MQ=255) gttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGc > 1:1853818‑M2/63‑108 (MQ=255) gaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACa < 1:1744383‑M2/83‑1 (MQ=255) acatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAgg < 1:1081765‑M2/85‑1 (MQ=255) atcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGaa > 2:266281‑M2/53‑139 (MQ=255) tcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAg > 1:32761‑M2/52‑139 (MQ=255) cAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCaaa < 2:1518192/55‑1 (MQ=255) cAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCaaa > 1:1518192/1‑55 (MQ=255) ttttgcggtaaaacttagtcaatcagacctccgccaagttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAg < 2:1494041‑M2/99‑1 (MQ=255) tgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCgg < 1:266281‑M2/102‑1 (MQ=255) tgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCgg < 2:735347‑M2/102‑1 (MQ=255) tgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGACATACATTACGGTCGACATTGAGGACGCCAGCACGGCGTGCACCGCAAACACCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCgg < 2:1197308‑M2/102‑1 (MQ=255) aaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCa < 2:498028‑M2/68‑1 (MQ=255) aaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCa > 1:498028‑M2/31‑98 (MQ=255) aGTCAATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCAAagag < 2:1544767/39‑1 (MQ=255) aGTCAATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCAAagag > 1:1544767/1‑39 (MQ=255) tcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAg < 2:278224‑M2/99‑1 (MQ=255) tcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAg > 1:278224‑M2/23‑121 (MQ=255) tcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCccac > 2:1387170‑M2/23‑139 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCaa > 2:2467‑M2/19‑87 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCaa < 1:2467‑M2/69‑1 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGc > 2:1848099‑M2/19‑139 (MQ=255) cagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCa > 1:73352‑M2/18‑139 (MQ=255) agacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCAt < 2:1005015‑M2/123‑1 (MQ=255) gacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATg < 1:1848099‑M2/124‑1 (MQ=255) acctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATgg > 1:1733866‑M2/15‑139 (MQ=255) cctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGc < 2:443736‑M2/126‑1 (MQ=255) ctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAgg > 2:1825088‑M2/13‑97 (MQ=255) ctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAgg < 1:1825088‑M2/85‑1 (MQ=255) ccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGt > 1:1677176‑M2/11‑139 (MQ=255) cgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGGAGGTAAATTCCAGCGGTTCGGTAAt > 1:1669340‑M2/10‑120 (MQ=255) cgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGGAGGTAAATTCCAGCGGTTCGGTAAt < 2:1669340‑M2/111‑1 (MQ=255) cgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGtt > 2:937557‑M2/10‑139 (MQ=255) tgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAg < 1:557496‑M2/99‑1 (MQ=255) tgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAg > 2:557496‑M2/5‑103 (MQ=255) ttCACCACACCAAAGAGATACATTACGGTCGACATTGAg > 2:591342‑M2/3‑39 (MQ=255) ttCACCACACCAAAGAGATACATTACGGTCGACATTGAg < 1:591342‑M2/37‑1 (MQ=255) | GGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTT > NC_000913/3862391‑3862656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |