Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,425,980	G→A	pseudogene (351/453 nt)	ydaY →	pseudogene, Rac prophage,Phage or Prophage Related

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,425,980	0	G	A	100.0%	247.0 / NA	76	pseudogene (351/453 nt)	ydaY	pseudogene, Rac prophage,Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (43/33);  total (43/33)

GAATATACGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAGCTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGTTGTTGTACGCCTATT  >  NC_000913/1425849‑1426115                                                                                                                                    |                                                                                                                                          aaaTATACGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAAGCCAGAGTTGTACTGGCAGATCCTTGCAGAAGTAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCa                                                                                                                                    >  2:1153106/2‑139 (MQ=255)      taCGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCggt                                                                                                                               >  1:970052/1‑139 (MQ=255)      taCGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCggt                                                                                                                               >  1:968862/1‑139 (MQ=255)      taCGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCggt                                                                                                                               <  1:894128/139‑1 (MQ=255)      taCGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCggt                                                                                                                               >  1:1877135/1‑139 (MQ=255)           cAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGGGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTa                                                                                                                          >  1:969865/1‑139 (MQ=255)           cAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTa                                                                                                                          >  1:244190/1‑139 (MQ=255)              aaCGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCg                                                                                                                       >  2:583499/1‑139 (MQ=255)              aaCGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCg                                                                                                                       >  2:1551590/1‑139 (MQ=255)              aaCGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCg                                                                                                                       <  1:1551590/139‑1 (MQ=255)                cGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGa                                                                                                                     >  2:6695/1‑139 (MQ=255)                      aTCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCgg                                                                                                               <  2:399151/139‑1 (MQ=255)                        cgcgCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCgggg                                                                                                             <  2:1825460/139‑1 (MQ=255)                         gcgcTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCggggg                                                                                                            >  2:439709/1‑139 (MQ=255)                            ctgctTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGgaga                                                                                                         <  1:1153106/139‑1 (MQ=255)                             tgctTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGaa                                                                                                        >  1:556982/1‑139 (MQ=255)                                 tAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAggg                                                                                                    >  1:1752132/1‑139 (MQ=255)                                      aGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGaa                                                                                               <  1:439709/139‑1 (MQ=255)                                         aTCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAg                                                                                            >  1:610262/1‑139 (MQ=255)                                         aTCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAg                                                                                            >  1:478155/1‑139 (MQ=255)                                         aTCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAg                                                                                            >  1:514340/1‑139 (MQ=255)                                                  tGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATgg                                                                                   >  1:551278/1‑139 (MQ=255)                                                    tACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAg                                                                                                                                   >  2:120826/1‑89 (MQ=255)                                                    tACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAg                                                                                                                                   <  1:120826/89‑1 (MQ=255)                                                    tACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGaa                                                                                 >  1:1259353/1‑139 (MQ=255)                                                    tACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGaa                                                                                 >  2:634883/1‑139 (MQ=255)                                                    tACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGaa                                                                                 >  1:1198048/1‑139 (MQ=255)                                                         gCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCgag                                                                           <  2:970052/139‑1 (MQ=255)                                                              tCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGaaaaa                                                                      >  1:390953/1‑139 (MQ=255)                                                              tCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGaaaaa                                                                      >  2:1088515/1‑139 (MQ=255)                                                                cTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACt                                                                    <  2:478155/139‑1 (MQ=255)                                                                   gCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGgaga                                                                                                         <  1:443534/100‑1 (MQ=255)                                                                   gCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGgaga                                                                                                         >  2:443534/1‑100 (MQ=255)                                                                    cAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAgg                                                                <  2:556982/139‑1 (MQ=255)                                                                       aaGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTg                                                             <  1:109071/139‑1 (MQ=255)                                                                         gcagcCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAgg                                                                >  2:1322122/1‑134 (MQ=255)                                                                         gcagcCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAgg                                                                <  1:1322122/134‑1 (MQ=255)                                                                         gcagcCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGcc                                                           >  1:274407/1‑139 (MQ=255)                                                                            gccagcATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCAcc                                                        >  2:774367/1‑139 (MQ=255)                                                                                   tCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCg                                                >  1:290873/1‑139 (MQ=255)                                                                                     gCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGa                                              <  2:1877135/139‑1 (MQ=255)                                                                                       ccAGGGTAAAGGGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAAc                                            <  2:969865/139‑1 (MQ=255)                                                                                       ccAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAAc                                            <  2:390953/139‑1 (MQ=255)                                                                                                agagCAGCAGAAGCAGGATACGCTAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAG‑AAGGGGGGGAAAGGCCAGAAGGAAGGGGGGAAAAACT‑AGGTTGCCACCGAATACCGGACCAAAAAATaa                                   >  1:813118/1‑138 (MQ=255)                                                                                                agagCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCg                                                                                                                                 <  2:214835/47‑1 (MQ=255)                                                                                                agagCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCg                                                                                                                                 >  1:214835/1‑47 (MQ=255)                                                                                                 gagCAGCAGAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGa                                  <  1:583499/139‑1 (MQ=255)                                                                                                    cagcagAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGAccc                               <  1:517349/139‑1 (MQ=255)                                                                                                    cagcagAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGAccc                               <  1:6695/139‑1 (MQ=255)                                                                                                     agcagAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTAt                                                                                                                         >  2:1773403/1‑50 (MQ=255)                                                                                                     agcagAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTAt                                                                                                                         <  1:1773403/50‑1 (MQ=255)                                                                                                     agcagAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCg                              >  1:1825961/1‑139 (MQ=255)                                                                                                     agcagAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCg                              >  1:1428924/1‑139 (MQ=255)                                                                                                     agcagAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATAGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCg                              >  2:1254022/1‑139 (MQ=255)                                                                                                         gAAGCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGc                          >  1:1797945/1‑139 (MQ=255)                                                                                                            gCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTa                       >  1:1478458/1‑139 (MQ=255)                                                                                                            gCAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTa                       <  2:274407/139‑1 (MQ=255)                                                                                                             cAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTg                           <  2:1490641/134‑1 (MQ=255)                                                                                                             cAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTg                           >  1:1490641/1‑134 (MQ=255)                                                                                                               ggATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAgg                    <  2:968862/139‑1 (MQ=255)                                                                                                                gATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAGGa                   >  1:369090/1‑139 (MQ=255)                                                                                                                  tACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAgt                 <  2:1259353/139‑1 (MQ=255)                                                                                                                    cGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCgg                             >  1:760268/1‑125 (MQ=255)                                                                                                                    cGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCgg                             <  2:760268/125‑1 (MQ=255)                                                                                                                     gATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAgttgt              >  1:283441/1‑139 (MQ=255)                                                                                                                       tAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGttgttg            <  2:283441/139‑1 (MQ=255)                                                                                                                          aaaaGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAg                     <  2:1466078/127‑1 (MQ=255)                                                                                                                          aaaaGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAg                     >  1:1466078/1‑127 (MQ=255)                                                                                                                          aaaaGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGTTGTTGTAc         >  2:226746/1‑139 (MQ=255)                                                                                                                             aGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGAAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGTTGTTGTACGcc      <  1:982473/139‑1 (MQ=255)                                                                                                                               ccATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAgg                                                                                           <  2:280776/54‑1 (MQ=255)                                                                                                                               ccATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAgg                                                                                           >  1:280776/1‑54 (MQ=255)                                                                                                                               ccATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGTTGTTGTACGCCTa    >  2:505346/1‑139 (MQ=255)                                                                                                                               ccATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGTTGTTGTACGCCTa    <  2:290873/139‑1 (MQ=255)                                                                                                                                 aTAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGTTGTTGTACGCCTAtt  <  2:1797945/139‑1 (MQ=255)                                                                                                                                 aTAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGTTGTTGTACGCCTAtt  <  2:244190/139‑1 (MQ=255)                                                                                                                                    |                                                                                                                                          GAATATACGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAGCAGGATACGATAAAAAAGCCATAGCTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAA‑GCGAGAAAAACTCAGGTTGCCACCG‑ATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGTTGTTGTACGCCTATT  >  NC_000913/1425849‑1426115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑